Merge pull request #1955 from cmu-delphi/ndefries/google-symptoms-no-… #562
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| # This workflow uses actions that are not certified by GitHub. | |
| # They are provided by a third-party and are governed by | |
| # separate terms of service, privacy policy, and support | |
| # documentation. | |
| # | |
| # See https://github.com/r-lib/actions/tree/master/examples#readme for | |
| # additional example workflows available for the R community. | |
| name: R backfill corrections | |
| on: | |
| push: | |
| branches: [ main, prod ] | |
| pull_request: | |
| types: [ opened, synchronize, reopened, ready_for_review ] | |
| branches: [ main, prod ] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| if: github.event.pull_request.draft == false | |
| strategy: | |
| matrix: | |
| r-version: [4.2.1] | |
| defaults: | |
| run: | |
| working-directory: backfill_corrections/delphiBackfillCorrection | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up R ${{ matrix.r-version }} | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.r-version }} | |
| use-public-rspm: true | |
| - name: Install linux dependencies | |
| run: | | |
| sudo apt-get install \ | |
| libcurl4-openssl-dev \ | |
| libgdal-dev \ | |
| libudunits2-dev \ | |
| libglpk-dev \ | |
| libharfbuzz-dev \ | |
| libfribidi-dev | |
| - name: Get date | |
| id: get-date | |
| run: | | |
| echo "::set-output name=date::$(/bin/date -u "+%Y%m%d")" | |
| - name: Cache R packages | |
| uses: actions/cache@v2 | |
| with: | |
| path: ${{ env.R_LIBS_USER }} | |
| key: ${{ runner.os }}-r-backfillcorr-${{ steps.get-date.outputs.date }} | |
| restore-keys: | | |
| ${{ runner.os }}-r-backfillcorr- | |
| - name: Install and cache dependencies | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| extra-packages: any::rcmdcheck | |
| working-directory: backfill_corrections/delphiBackfillCorrection | |
| upgrade: 'TRUE' | |
| - name: Check package | |
| uses: r-lib/actions/check-r-package@v2 | |
| with: | |
| working-directory: backfill_corrections/delphiBackfillCorrection | |
| args: 'c("--no-manual", "--test-dir=unit-tests")' | |
| error-on: '"error"' |