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[BUG] Use len_with_deleted instead of len (#3431)
## Description of changes This is a follow-up from #3424 - where I had added code to fix the bug in compaction but then forgot to replace the method at the actual callsite with the new method 🤦🏼 . This updates the problem code to use `len_with_deleted` instead of just `len` so that the resize actually gets triggered. Some additional context: we decided not to change the behavior of the existing `len` method in case other callers were depending on existing behavior. In other words, we didn't want to introduce accidentally introduce bugs that were relying on the "buggy" code.
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