Switch to hedronvision/bazel-compile-commands for compilation db.

The grailbio/bazel-compilation-database only works for non-bzlmod
and is not maintained anymore, while hedronvision works for
old and new bazel and currently is maintained.

It is slower and more invasive (creating unwanted links and adds
things to .git), so mostly reluctant change, but it keeps the
light on.

.github/bin/make-compilation-db.sh

@@ -13,16 +13,7 @@
 # See the License for the specific language governing permissions and
 # limitations under the License.
 
-set -u
-set -e
+bazel run -c opt @hedron_compile_commands//:refresh_all
 
-readonly OUTPUT_BASE="$(bazel info output_base)"
-
-readonly COMPDB_SCRIPT="${OUTPUT_BASE}/external/rules_compdb/generate.py"
-[ -r "${COMPDB_SCRIPT}" ] || bazel fetch ...
-
-python3 "${COMPDB_SCRIPT}"
-
-# Remove a flags observed in the wild that clang-tidy doesn't understand.
-sed -i -e 's/-fno-canonical-system-headers//g; s/DEBUG_PREFIX_MAP_PWD=.//g' \
-       compile_commands.json
+sed 's/bazel-out\/.*\/bin\/external\//bazel-out\/..\/..\/..\/external\//g' -i compile_commands.json
+sed 's/bazel-out\/.*\/bin/bazel-bin/g' -i compile_commands.json

.github/bin/run-clang-format.sh

@@ -37,7 +37,7 @@ find . -name "*.h" -o -name "*.cc" \
 # If we have buildifier installed, use that on BUILD files
 if command -v ${BUILDIFIER} >/dev/null; then
   echo "Run $(buildifier --version)"
-  ${BUILDIFIER} -lint=fix WORKSPACE $(find . -name BUILD -o -name "*.bzl")
+  ${BUILDIFIER} -lint=fix WORKSPACE* MODULE.bazel $(find . -name BUILD -o -name "*.bzl")
 fi
 
 # Check if we got any diff

.github/workflows/verible-ci.yml

@@ -92,15 +92,28 @@ jobs:
         path: |
           /root/.cache/clang-tidy
           /root/.cache/bazel
-        key: clang-tidy-${{ steps.cache_timestamp.outputs.time }}
-        restore-keys: clang-tidy-
+        key: clang-tidy-2-${{ steps.cache_timestamp.outputs.time }}
+        restore-keys: clang-tidy-2-
 
-    - name: Run clang tidy
+    - name: Make compilation DB
       run: |
-        echo "::group::Make Compilation DB"
         .github/bin/make-compilation-db.sh
         wc -l compile_commands.json
-        echo "::endgroup::"
+
+    - name: Build generated files
+      run: |
+        bazel build //common/lsp:jcxxgen-testfile-gen \
+          //common/lsp:lsp-protocol-gen \
+          //common/util:version-header \
+          //verilog/CST:verilog-nonterminals-foreach-gen \
+          //verilog/parser:verilog-parse-interface \
+          //verilog/parser:gen-verilog-token-enum \
+          //third_party/proto/kythe:storage_cc_proto \
+          //third_party/proto/kythe:analysis_cc_proto
+
+    - name: Run clang tidy
+      run: |
+        wc -l compile_commands.json
         # For runtime references, use clang-tidy 11 that still has it, everything else: latest.
         CLANG_TIDY=clang-tidy-11 ./.github/bin/run-clang-tidy-cached.cc --checks="-*,google-runtime-references" \
            || ( cat verible_clang-tidy.out ; exit 1)

MODULE.bazel

@@ -4,74 +4,87 @@ module(
 
 bazel_dep(name = "platforms", version = "0.0.8")
 bazel_dep(name = "bazel_skylib", version = "1.5.0")
-
 bazel_dep(name = "rules_license", version = "0.0.8")
 bazel_dep(name = "rules_proto", version = "6.0.0-rc2")
 bazel_dep(name = "rules_cc", version = "0.0.9")
 
 # Register m4 rules and toolchain.
 bazel_dep(name = "rules_m4", version = "0.2.3")
+
 m4 = use_extension(
     "@rules_m4//m4/extensions:m4_repository_ext.bzl",
     "m4_repository_ext",
 )
 m4.repository(
     name = "m4",
-    version = "1.4.18",
     extra_copts = ["-O3"],
+    version = "1.4.18",
 )
 use_repo(m4, "m4")
+
 register_toolchains("@m4//:toolchain")
 
 # Register bison rules and toolchain.
 bazel_dep(name = "rules_bison", version = "0.2.2")
+
 bison = use_extension(
     "@rules_bison//bison/extensions:bison_repository_ext.bzl",
     "bison_repository_ext",
 )
 bison.repository(
     name = "bison",
-    version = "3.3.2",
     extra_copts = ["-O3"],
+    version = "3.3.2",
 )
 use_repo(bison, "bison")
+
 register_toolchains("@bison//:toolchain")
 
 # Register flex rules and toolchain.
 bazel_dep(name = "rules_flex", version = "0.2.1")
+
 flex = use_extension(
     "@rules_flex//flex/extensions:flex_repository_ext.bzl",
     "flex_repository_ext",
 )
 flex.repository(
     name = "flex",
-    version = "2.6.4",
     extra_copts = ["-O3"],
+    version = "2.6.4",
 )
 use_repo(flex, "flex")
+
 register_toolchains("@flex//:toolchain")
 
 # abseil-cpp can not be updated beyond the following curringly, as newer
 # ones use googletest that is not compatible with bazel 6 anymore.
-bazel_dep(name = "abseil-cpp", version = "20240116.2", repo_name="com_google_absl")
+bazel_dep(name = "abseil-cpp", version = "20240116.2", repo_name = "com_google_absl")
 single_version_override(
     module_name = "abseil-cpp",
     patch_strip = 1,
-    version = "20240116.2",
     patches = ["//bazel:absl.patch"],
+    version = "20240116.2",
 )
 
 # Json module only provide the multi-header target, but that will
 # make misc-inlude-cleaner complain about not direct includes.
-bazel_dep(name = "nlohmann_json", version = "3.11.3", repo_name="jsonhpp")
+bazel_dep(name = "nlohmann_json", version = "3.11.3", repo_name = "jsonhpp")
 single_version_override(
     module_name = "nlohmann_json",
     patches = ["//bazel:nlohmann_module.patch"],
 )
 
-bazel_dep(name = "re2", version = "2023-09-01", repo_name="com_googlesource_code_re2")
+bazel_dep(name = "re2", version = "2023-09-01", repo_name = "com_googlesource_code_re2")
 
 # Newer versions require bazel 7, so this is the last we can use currently.
-bazel_dep(name = "googletest", version = "1.14.0.bcr.1", repo_name="com_google_googletest")
-bazel_dep(name = "protobuf", version = "26.0", repo_name="com_google_protobuf")
+bazel_dep(name = "googletest", version = "1.14.0.bcr.1", repo_name = "com_google_googletest")
+bazel_dep(name = "protobuf", version = "26.0", repo_name = "com_google_protobuf")
 bazel_dep(name = "zlib", version = "1.3.1")
+
+# Make compilation DB
+bazel_dep(name = "hedron_compile_commands", dev_dependency = True)
+git_override(
+    module_name = "hedron_compile_commands",
+    commit = "1e08f8e0507b6b6b1f4416a9a22cf5c28beaba93",
+    remote = "https://github.com/hedronvision/bazel-compile-commands-extractor.git",
+)

WORKSPACE

@@ -1,3 +1,4 @@
+# Legacy workspace for bazel5. Will go away.
 workspace(name = "com_google_verible")
 
 load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
@@ -177,14 +178,27 @@ http_archive(
     ],
 )
 
-# 2024-02-06
+# Hedron's Compile Commands Extractor for Bazel
+# https://github.com/hedronvision/bazel-compile-commands-extractor
 http_archive(
-    name = "rules_compdb",
-    sha256 = "70232adda61e89a4192be43b4719d35316ed7159466d0ab4f3da0ecb1fbf00b2",
-    strip_prefix = "bazel-compilation-database-fa872dd80742b3dccd79a711f52f286cbde33676",
-    urls = ["https://github.com/grailbio/bazel-compilation-database/archive/fa872dd80742b3dccd79a711f52f286cbde33676.tar.gz"],
+    name = "hedron_compile_commands",
+    sha256 = "044b148b111e17cee61d8c3aaeed42069f7325460382340afca4919f8265094c",
+    strip_prefix = "bazel-compile-commands-extractor-1e08f8e0507b6b6b1f4416a9a22cf5c28beaba93",
+    url = "https://github.com/hedronvision/bazel-compile-commands-extractor/archive/1e08f8e0507b6b6b1f4416a9a22cf5c28beaba93.tar.gz",
 )
 
-load("@rules_compdb//:deps.bzl", "rules_compdb_deps")
+load("@hedron_compile_commands//:workspace_setup.bzl", "hedron_compile_commands_setup")
 
-rules_compdb_deps()
+hedron_compile_commands_setup()
+
+load("@hedron_compile_commands//:workspace_setup_transitive.bzl", "hedron_compile_commands_setup_transitive")
+
+hedron_compile_commands_setup_transitive()
+
+load("@hedron_compile_commands//:workspace_setup_transitive_transitive.bzl", "hedron_compile_commands_setup_transitive_transitive")
+
+hedron_compile_commands_setup_transitive_transitive()
+
+load("@hedron_compile_commands//:workspace_setup_transitive_transitive_transitive.bzl", "hedron_compile_commands_setup_transitive_transitive_transitive")
+
+hedron_compile_commands_setup_transitive_transitive_transitive()

WORKSPACE.bzlmod

@@ -1,7 +1,6 @@
 workspace(name = "com_google_verible")
 
 load("@bazel_tools//tools/build_defs/repo:http.bzl", "http_archive")
-load("@bazel_tools//tools/build_defs/repo:utils.bzl", "maybe")
 
 #
 # External tools needed
@@ -27,15 +26,3 @@ install_rules_dependencies()
 load("@com_github_google_rules_install//:setup.bzl", "install_rules_setup")
 
 install_rules_setup()
-
-# 2024-02-06
-http_archive(
-    name = "rules_compdb",
-    sha256 = "70232adda61e89a4192be43b4719d35316ed7159466d0ab4f3da0ecb1fbf00b2",
-    strip_prefix = "bazel-compilation-database-fa872dd80742b3dccd79a711f52f286cbde33676",
-    urls = ["https://github.com/grailbio/bazel-compilation-database/archive/fa872dd80742b3dccd79a711f52f286cbde33676.tar.gz"],
-)
-
-load("@rules_compdb//:deps.bzl", "rules_compdb_deps")
-
-rules_compdb_deps()