Tests

Resolve conflict and merge, #4 #2

	name: Tests
	on:
	- push
	- pull_request

	jobs:
	# Installs the conda environment and ProteinDT package
	install:
	name: Test ProteinDT installation
	runs-on: ${{ matrix.os }}
	strategy:
	fail-fast: false
	matrix:
	# Could also test on the beta M1 macOS or other runners
	# https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories
	os:
	- ubuntu-latest
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	# Use mamba instead of conda
	- name: Install conda environment
	uses: conda-incubator/setup-miniconda@v2
	with:
	activate-environment: ProteinDT
	environment-file: environment.yml
	auto-activate-base: false
	miniforge-variant: Mambaforge
	miniforge-version: 'latest'
	use-mamba: true
	# Installs fair-esm package into the activated conda environment without dependencies
	- name: Install fair-esm
	shell: bash --login {0}
	run: pip install fair-esm[esmfold]==2.0.0 --no-dependencies # Override deepspeed==0.5
	# Installs ProteinDT package into the activated conda environment
	- name: Install ProteinDT
	shell: bash --login {0}
	run: pip install .
	# Log conda environment contents
	- name: Log conda environment
	shell: bash --login {0}
	run: conda list
	- name: Test ProteinDT import
	shell: bash --login {0}
	run: python -c 'from ProteinDT.models.model_ProteinText import ProteinTextModel'

Provide feedback