v5.1.0
What's Changed
Schema
- editorial by @brianraymor in #880
- editorial by @brianraymor in #883
- Refreshed ontologies by @brianraymor in #892
- clarified the Slide-seqV2 requirement by @brianraymor in #850
- restored 3.1.0 obsm requirements by @brianraymor in #860
- updated image requirements by @brianraymor in #868
- Updated requirements for assay_ontology_term_id by @brianraymor in #872
Feat
- feat: remove intermediate pypi publish from schema version bump by @danieljhegeman in #841
- feat: datasets demo with visibility by @MillenniumFalconMechanic in #835
Schema 5.1.0
- feat(schema 5.1.0): update validation for obsm X_ embeddings by @nayib-jose-gloria in #856
- feat(schema 5.1.0): validate uns[spatial] by @MillenniumFalconMechanic in #858
- feat: cellxgene-schema CLI must add validation for obsm['spatial'] by @nayib-jose-gloria in #863
- feat(schema 5.1.0): validate obs[array_col], obs[array_row] and obs[in_tissue] by @MillenniumFalconMechanic in #861
- feat(schema 5.1.0): validate obs[cell_type_ontology_term_id] by @MillenniumFalconMechanic in #864
- feat: update validation for obs['is_primary_data'] to enforce False if uns['spatial']['is_single'] is False by @nayib-jose-gloria in #865
- feat: update X matrix validation to validate Visium assays by @nayib-jose-gloria in #876
- feat(schema 5.1.0): unique spatial assay ontology term id by @MillenniumFalconMechanic in #885
- fix: rename ontology_files and ONTOLOGY_DIR references to gencode_files and GENCODE_DIR by @nayib-jose-gloria in #847
- fix(schema 5.1.0): throw error if obsm is not type np.ndarray by @Bento007 in #859
- fix(5.1.0): type check for spatial and nested values by @Bento007 in #875
- fix: check type of uns["spatial"][library_id] is dict by @Bento007 in #886
- fix(schema 5.1.0): validate ['library_id']['images'][image] of type u… by @MillenniumFalconMechanic in #882
- fix: load SparseDatasets into memory by @Bento007 in #898
- fix: update migration_template for linting and generate_script.py to add GENCODE_MAPPER by @nayib-jose-gloria in #914
Chore
- chore(deps): bump cython from 0.29.34 to 3.0.10 in /cellxgene_schema_cli by @dependabot in #924
Full Changelog: v5.0.2...v5.1.0