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Proviral landscape plots #22

Merged
merged 12 commits into from
Jun 16, 2023
Merged

Proviral landscape plots #22

merged 12 commits into from
Jun 16, 2023

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CBeelen
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@CBeelen CBeelen commented Jun 15, 2023

Create a new output file, proviral_landscape.csv, which contains information about the blast matches (from an intermediate file produced by HIVSeqinR) as well as the defect category (from the column MyVerdict in table_precursor.csv). This file can be used to generate proviral landscape plots with a tool located on the BBlabtools website - it needs to be generated in a separate step to allow researchers to combine data that is spread across several runs, and to manually add or modify the data in the file.

Closes #16

@CBeelen CBeelen requested a review from donkirkby June 15, 2023 22:37
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Looks good.

@CBeelen CBeelen merged commit e48df28 into master Jun 16, 2023
@CBeelen CBeelen deleted the ProviralLandscapePlots branch June 16, 2023 17:07
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Tool for plotting proviral landscapes
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