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Create a new output file,
proviral_landscape.csv
, which contains information about the blast matches (from an intermediate file produced by HIVSeqinR) as well as the defect category (from the columnMyVerdict
intable_precursor.csv
). This file can be used to generate proviral landscape plots with a tool located on the BBlabtools website - it needs to be generated in a separate step to allow researchers to combine data that is spread across several runs, and to manually add or modify the data in the file.Closes #16