Add missing codes to the HIVINACT_ERRORS_TABLE #151
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| # This workflow will install Python dependencies, run tests and lint with a single version of Python | |
| # For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions | |
| name: Python application | |
| on: push | |
| jobs: | |
| build: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install minimap2 | |
| run: | | |
| cd /opt | |
| wget https://github.com/lh3/minimap2/releases/download/v2.17/minimap2-2.17_x64-linux.tar.bz2 | |
| tar -jxvf ./minimap2-2.17_x64-linux.tar.bz2 | |
| echo /opt/minimap2-2.17_x64-linux >> $GITHUB_PATH | |
| - name: Install dependencies | |
| run: | | |
| sudo apt install -qq mafft ncbi-blast+ | |
| python -m pip install --upgrade pip pipenv | |
| pipenv install --dev | |
| - name: Test with pytest | |
| run: | | |
| pipenv run python -m pytest |