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WIP: added some basic devcontainer config and a simple Dockerfile bas… #2

WIP: added some basic devcontainer config and a simple Dockerfile bas…

WIP: added some basic devcontainer config and a simple Dockerfile bas… #2

Workflow file for this run

name: Automated Tests
on: ["push"]
jobs:
build:
runs-on: [self-hosted]
steps:
- uses: actions/checkout@v3
with:
submodules: 'true'
- name: Setup pipenv
run: |
pip install --upgrade pip
python -m venv venv
./venv/bin/pip install --upgrade pip
./venv/bin/pip install pipenv
- name: Install dependencies
run: |
PIPENV_VENV_IN_PROJECT=1 ./venv/bin/pipenv sync -d
# - name: Dummy settings file
# run: cp phylowatch/settings_default.py phylowatch/settings.py
- name: Static checks
run: |
./.venv/bin/flake8 phylowatch --show-source --statistics
./.venv/bin/flake8 tests --show-source --statistics
continue-on-error: true
- name: Unit tests
run: ./.venv/bin/pytest --cov-config=.coveragerc --cov --cov-report=xml:coverage.xml --mpl tests
- name: Upload coverage reports to Codecov with GitHub Action
uses: codecov/codecov-action@v3
with:
token: ${{ secrets.CODECOV_TOKEN }}
root_dir: ${{ github.workspace }}
files: ${{ github.workspace }}/coverage.xml