Skip to content

Contig stitcher: fix visualisation of non-overlapping contigs

Codecov / codecov/patch succeeded Jan 19, 2024 in 1s

89.08% of diff hit (target 86.42%)

View this Pull Request on Codecov

89.08% of diff hit (target 86.42%)

Annotations

Check warning on line 231 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L231 

Added line #L231 was not covered by tests

Check warning on line 234 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L233-L234 

Added lines #L233 - L234 were not covered by tests

Check warning on line 245 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L243-L245 

Added lines #L243 - L245 were not covered by tests

Check warning on line 248 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L248 

Added line #L248 was not covered by tests

Check warning on line 254 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L254 

Added line #L254 was not covered by tests

Check warning on line 372 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L372 

Added line #L372 was not covered by tests

Check warning on line 379 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L379 

Added line #L379 was not covered by tests

Check warning on line 540 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L540 

Added line #L540 was not covered by tests

Check warning on line 573 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L573 

Added line #L573 was not covered by tests

Check warning on line 575 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L575 

Added line #L575 was not covered by tests

Check warning on line 674 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L674 

Added line #L674 was not covered by tests

Check warning on line 676 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L676 

Added line #L676 was not covered by tests

Check warning on line 689 in micall/core/contig_stitcher.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/contig_stitcher.py#L688-L689 

Added lines #L688 - L689 were not covered by tests

Check warning on line 285 in micall/core/denovo.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/denovo.py#L285 

Added line #L285 was not covered by tests

Check warning on line 288 in micall/core/denovo.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/denovo.py#L288 

Added line #L288 was not covered by tests

Check warning on line 30 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L27-L30 

Added lines #L27 - L30 were not covered by tests

Check warning on line 32 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L32 

Added line #L32 was not covered by tests

Check warning on line 427 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L427 

Added line #L427 was not covered by tests

Check warning on line 470 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L470 

Added line #L470 was not covered by tests

Check warning on line 473 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L473 

Added line #L473 was not covered by tests

Check warning on line 527 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L526-L527 

Added lines #L526 - L527 were not covered by tests

Check warning on line 534 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L534 

Added line #L534 was not covered by tests

Check warning on line 536 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L536 

Added line #L536 was not covered by tests

Check warning on line 538 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L538 

Added line #L538 was not covered by tests

Check warning on line 540 in micall/core/plot_contigs.py

See this annotation in the file changed.

@codecov codecov / codecov/patch

micall/core/plot_contigs.py#L540 

Added line #L540 was not covered by tests
View more details on Codecov