Remove unused imports in cigar_tools and contig_sticher

micall/core/contig_stitcher.py

@@ -1,18 +1,6 @@
-import argparse
-import logging
-import os
 from typing import Iterable, Optional, Tuple, List
-from collections import Counter, deque
-from csv import DictWriter, DictReader
+from collections import deque
 from dataclasses import dataclass
-from datetime import datetime
-from glob import glob
-from io import StringIO
-from itertools import chain
-from operator import itemgetter
-from shutil import rmtree
-from subprocess import run, PIPE, CalledProcessError, STDOUT
-from tempfile import mkdtemp
 from mappy import Aligner
 from functools import cached_property
 from gotoh import align_it

micall/utils/cigar_tools.py

@@ -4,11 +4,8 @@
 
 from math import ceil, floor
 import re
-from typing import List, Tuple, Iterable, Optional
-from collections import OrderedDict
+from typing import Tuple, Iterable, Optional
 from dataclasses import dataclass
-import itertools
-import copy
 from functools import cached_property
 
 from micall.utils.consensus_aligner import CigarActions