Contig stitcher: change unaligned colour

cfe-lab · Jan 25, 2024 · ce03442 · ce03442
1 parent 3f0376a
commit ce03442
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/micall/core/plot_contigs.py b/micall/core/plot_contigs.py
@@ -1014,7 +1014,7 @@ def get_all_arrows(group_ref: str, labels: bool) -> Iterable[Arrow]:
                         else:
                             figure.add(Arrow(a_r_st, a_r_ei, elevation=-20, h=1))
                     else:
-                        colour = "red"
+                        colour = "yellow"
 
                     name = name_mappings.get(contig_name, contig_name)
                     figure.add(Track(a_r_st, a_r_ei, color=colour, label=name))
@@ -1036,7 +1036,7 @@ def get_all_arrows(group_ref: str, labels: bool) -> Iterable[Arrow]:
                 contig = contig_map[contig_name]
                 r_st = position_offset
                 r_ei = position_offset + len(contig.seq)
-                colour = "red"
+                colour = "yellow"
                 name = name_mappings.get(contig_name, contig_name)
                 figure.add(Track(r_st, r_ei, color=colour, label=name))
 

diff --git a/micall/tests/data/stitcher_plots/test_stitching_with_empty_contigs.svg b/micall/tests/data/stitcher_plots/test_stitching_with_empty_contigs.svg