Reduce k-mer size for Haploflow

cfe-lab · Dec 4, 2024 · 4077ca3 · 4077ca3
1 parent 22cd569
commit 4077ca3
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/micall/core/denovo.py b/micall/core/denovo.py
@@ -59,7 +59,7 @@ def denovo(fastq1_path: Path,
                   'thres': -1,
                   'strict': 5,
                   'error': 0.02,
-                  'kmer': 41,
+                  'kmer': 23,
                   'merge': False,
                   'scaffold': False,
                   'patch': False,