add BLAST database index files

cfe-lab · Jun 1, 2023 · 2f8c44d · 2f8c44d
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diff --git a/util/subtype_alignments/A1.fasta.ndb b/util/subtype_alignments/A1.fasta.ndb
diff --git a/util/subtype_alignments/A1.fasta.nhr b/util/subtype_alignments/A1.fasta.nhr
diff --git a/util/subtype_alignments/A1.fasta.nin b/util/subtype_alignments/A1.fasta.nin
diff --git a/util/subtype_alignments/A1.fasta.not b/util/subtype_alignments/A1.fasta.not
diff --git a/util/subtype_alignments/A1.fasta.nsq b/util/subtype_alignments/A1.fasta.nsq
diff --git a/util/subtype_alignments/A1.fasta.ntf b/util/subtype_alignments/A1.fasta.ntf
diff --git a/util/subtype_alignments/A1.fasta.nto b/util/subtype_alignments/A1.fasta.nto
diff --git a/util/subtype_alignments/A2.fasta.ndb b/util/subtype_alignments/A2.fasta.ndb
diff --git a/util/subtype_alignments/A2.fasta.nhr b/util/subtype_alignments/A2.fasta.nhr
diff --git a/util/subtype_alignments/A2.fasta.nin b/util/subtype_alignments/A2.fasta.nin
diff --git a/util/subtype_alignments/A2.fasta.not b/util/subtype_alignments/A2.fasta.not
diff --git a/util/subtype_alignments/A2.fasta.nsq b/util/subtype_alignments/A2.fasta.nsq
diff --git a/util/subtype_alignments/A2.fasta.ntf b/util/subtype_alignments/A2.fasta.ntf
diff --git a/util/subtype_alignments/A2.fasta.nto b/util/subtype_alignments/A2.fasta.nto
diff --git a/util/subtype_alignments/B.fasta.ndb b/util/subtype_alignments/B.fasta.ndb
diff --git a/util/subtype_alignments/B.fasta.nhr b/util/subtype_alignments/B.fasta.nhr
diff --git a/util/subtype_alignments/B.fasta.nin b/util/subtype_alignments/B.fasta.nin
diff --git a/util/subtype_alignments/B.fasta.not b/util/subtype_alignments/B.fasta.not
diff --git a/util/subtype_alignments/B.fasta.nsq b/util/subtype_alignments/B.fasta.nsq
diff --git a/util/subtype_alignments/B.fasta.ntf b/util/subtype_alignments/B.fasta.ntf
diff --git a/util/subtype_alignments/B.fasta.nto b/util/subtype_alignments/B.fasta.nto
diff --git a/util/subtype_alignments/C.fasta.ndb b/util/subtype_alignments/C.fasta.ndb
diff --git a/util/subtype_alignments/C.fasta.nhr b/util/subtype_alignments/C.fasta.nhr
diff --git a/util/subtype_alignments/C.fasta.nin b/util/subtype_alignments/C.fasta.nin
diff --git a/util/subtype_alignments/C.fasta.not b/util/subtype_alignments/C.fasta.not
diff --git a/util/subtype_alignments/C.fasta.nsq b/util/subtype_alignments/C.fasta.nsq
diff --git a/util/subtype_alignments/C.fasta.ntf b/util/subtype_alignments/C.fasta.ntf
diff --git a/util/subtype_alignments/C.fasta.nto b/util/subtype_alignments/C.fasta.nto
diff --git a/util/subtype_alignments/D.fasta.ndb b/util/subtype_alignments/D.fasta.ndb
diff --git a/util/subtype_alignments/D.fasta.nhr b/util/subtype_alignments/D.fasta.nhr
diff --git a/util/subtype_alignments/D.fasta.nin b/util/subtype_alignments/D.fasta.nin
diff --git a/util/subtype_alignments/D.fasta.not b/util/subtype_alignments/D.fasta.not
diff --git a/util/subtype_alignments/D.fasta.nsq b/util/subtype_alignments/D.fasta.nsq
diff --git a/util/subtype_alignments/D.fasta.ntf b/util/subtype_alignments/D.fasta.ntf
diff --git a/util/subtype_alignments/D.fasta.nto b/util/subtype_alignments/D.fasta.nto
diff --git a/util/subtype_alignments/F1.fasta.ndb b/util/subtype_alignments/F1.fasta.ndb
diff --git a/util/subtype_alignments/F1.fasta.nhr b/util/subtype_alignments/F1.fasta.nhr
diff --git a/util/subtype_alignments/F1.fasta.nin b/util/subtype_alignments/F1.fasta.nin
diff --git a/util/subtype_alignments/F1.fasta.not b/util/subtype_alignments/F1.fasta.not
diff --git a/util/subtype_alignments/F1.fasta.nsq b/util/subtype_alignments/F1.fasta.nsq
diff --git a/util/subtype_alignments/F1.fasta.ntf b/util/subtype_alignments/F1.fasta.ntf
diff --git a/util/subtype_alignments/F1.fasta.nto b/util/subtype_alignments/F1.fasta.nto
diff --git a/util/subtype_alignments/F2.fasta.ndb b/util/subtype_alignments/F2.fasta.ndb
diff --git a/util/subtype_alignments/F2.fasta.nhr b/util/subtype_alignments/F2.fasta.nhr
diff --git a/util/subtype_alignments/F2.fasta.nin b/util/subtype_alignments/F2.fasta.nin
diff --git a/util/subtype_alignments/F2.fasta.not b/util/subtype_alignments/F2.fasta.not
diff --git a/util/subtype_alignments/F2.fasta.nsq b/util/subtype_alignments/F2.fasta.nsq
diff --git a/util/subtype_alignments/F2.fasta.ntf b/util/subtype_alignments/F2.fasta.ntf
diff --git a/util/subtype_alignments/F2.fasta.nto b/util/subtype_alignments/F2.fasta.nto
diff --git a/util/subtype_alignments/G.fasta.ndb b/util/subtype_alignments/G.fasta.ndb
diff --git a/util/subtype_alignments/G.fasta.nhr b/util/subtype_alignments/G.fasta.nhr
diff --git a/util/subtype_alignments/G.fasta.nin b/util/subtype_alignments/G.fasta.nin
diff --git a/util/subtype_alignments/G.fasta.not b/util/subtype_alignments/G.fasta.not
diff --git a/util/subtype_alignments/G.fasta.nsq b/util/subtype_alignments/G.fasta.nsq
diff --git a/util/subtype_alignments/G.fasta.ntf b/util/subtype_alignments/G.fasta.ntf
diff --git a/util/subtype_alignments/G.fasta.nto b/util/subtype_alignments/G.fasta.nto
diff --git a/util/subtype_alignments/H.fasta.ndb b/util/subtype_alignments/H.fasta.ndb
diff --git a/util/subtype_alignments/H.fasta.nhr b/util/subtype_alignments/H.fasta.nhr
diff --git a/util/subtype_alignments/H.fasta.nin b/util/subtype_alignments/H.fasta.nin
diff --git a/util/subtype_alignments/H.fasta.not b/util/subtype_alignments/H.fasta.not
diff --git a/util/subtype_alignments/H.fasta.nsq b/util/subtype_alignments/H.fasta.nsq
diff --git a/util/subtype_alignments/H.fasta.ntf b/util/subtype_alignments/H.fasta.ntf
diff --git a/util/subtype_alignments/H.fasta.nto b/util/subtype_alignments/H.fasta.nto
diff --git a/util/subtype_alignments/HXB2.fasta.ndb b/util/subtype_alignments/HXB2.fasta.ndb
diff --git a/util/subtype_alignments/HXB2.fasta.nhr b/util/subtype_alignments/HXB2.fasta.nhr
diff --git a/util/subtype_alignments/HXB2.fasta.nin b/util/subtype_alignments/HXB2.fasta.nin
diff --git a/util/subtype_alignments/HXB2.fasta.not b/util/subtype_alignments/HXB2.fasta.not
diff --git a/util/subtype_alignments/HXB2.fasta.nsq b/util/subtype_alignments/HXB2.fasta.nsq
diff --git a/util/subtype_alignments/HXB2.fasta.ntf b/util/subtype_alignments/HXB2.fasta.ntf
diff --git a/util/subtype_alignments/HXB2.fasta.nto b/util/subtype_alignments/HXB2.fasta.nto
diff --git a/util/subtype_alignments/all.fasta.ndb b/util/subtype_alignments/all.fasta.ndb
diff --git a/util/subtype_alignments/all.fasta.nhr b/util/subtype_alignments/all.fasta.nhr
diff --git a/util/subtype_alignments/all.fasta.nin b/util/subtype_alignments/all.fasta.nin
diff --git a/util/subtype_alignments/all.fasta.not b/util/subtype_alignments/all.fasta.not
diff --git a/util/subtype_alignments/all.fasta.nsq b/util/subtype_alignments/all.fasta.nsq
diff --git a/util/subtype_alignments/all.fasta.ntf b/util/subtype_alignments/all.fasta.ntf
diff --git a/util/subtype_alignments/all.fasta.nto b/util/subtype_alignments/all.fasta.nto