Delete clearly broken reference sequences

Including: - Ref.A1.AU.03.PS1044_Day0.DQ676872 - Ref.A2.CM.01.01CM_1445MV.GU201516 - Ref.B.US.98.1058_11.AY331295 - Ref.D.CM.01.01CM_4412HAL.AY371157 - Ref.F1.FR.96.96FR_MP411.AJ249238 - Ref.F2.CM.02.02CM_0016BBY.AY371158 - Ref.35_AD.AF.05.05AF095.EF158041 They were all missing MSD. This commit partially solves #8
cfe-lab · Apr 3, 2024 · 004c46b · 004c46b
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diff --git a/src/cfeintact/subtype_alignments/A1.fasta b/src/cfeintact/subtype_alignments/A1.fasta
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diff --git a/src/cfeintact/subtype_alignments/F1.fasta b/src/cfeintact/subtype_alignments/F1.fasta
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diff --git a/src/cfeintact/subtype_alignments/HXB2.fasta.nin b/src/cfeintact/subtype_alignments/HXB2.fasta.nin
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