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23 Open 56 Closed
23 Open 56 Closed
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Issues list

Low coverage assemblies can return non-zero exit
#78 opened May 30, 2017 by cerebis
Check sort order on contact_map.py
#76 opened Mar 28, 2017 by cerebis
Organisation of shared dependent modules
#75 opened Mar 21, 2017 by cerebis
Possible extension of profiles to include more definition.
#73 opened Feb 23, 2017 by cerebis
Implement free shearing simulation
#72 opened Feb 23, 2017 by cerebis
Multi-chrom genomes with procedural abundances enhancement low priority
#71 opened Feb 3, 2017 by cerebis
Fine-tuning simple structure simulation by nested intervals
#70 opened Dec 22, 2016 by cerebis
1
Specifying a few resource limits might be useful.
#68 opened Dec 5, 2016 by cerebis
Occasional occurence of java.util.ConcurrentModificationException
#66 opened Dec 1, 2016 by cerebis
Unintended continuation when single clade timeseries is given a multiple clade community
#65 opened Nov 29, 2016 by cerebis
Use of JavaSE8 Map.putIfAbsent() low priority
#63 opened Nov 29, 2016 by cerebis
nextflow hangs rather than exiting after workflow termination bug nextflow related
#62 opened Nov 28, 2016 by koadman
3
Random sampling of parameter space enhancement high priority
#59 opened Nov 23, 2016 by cerebis
1
wait_on jiffy only works for single files.
#55 opened Nov 9, 2016 by cerebis
sim3C: consider exposing more parameters controlling empirical distribution to users enhancement low priority
#52 opened Oct 25, 2016 by cerebis
3-way channel cross in multisample
#51 opened Oct 17, 2016 by koadman
1
Adopt a space efficient graph interchange format enhancement low priority
#47 opened Sep 30, 2016 by cerebis
4
sim3C should make use of a observer pattern enhancement low priority
#43 opened Sep 16, 2016 by cerebis
BWA MEM mapping can produce no mapped reads to some contigs question Research
#40 opened Sep 7, 2016 by cerebis
6
Ability to simulate simple 3D structure in Hi-C/3C reads
#39 opened Aug 26, 2016 by koadman
1 of 3 tasks
17
Sampling from a pool of real genomes enhancement low priority possible
#29 opened Jul 26, 2016 by cerebis
implement NMI measure enhancement low priority
#23 opened May 27, 2016 by cerebis
3
Add further graphical representations besides the basic contig graph. enhancement
#12 opened May 16, 2016 by cerebis
ProTip! Updated in the last three days: updated:>2024-12-13.