Fix segfault with imports across multiple directories #263
Workflow file for this run
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| name: CI | |
| on: | |
| pull_request: | |
| branches: [ main ] | |
| workflow_dispatch: | |
| env: | |
| BUILDCACHE_ACCURACY: STRICT | |
| BUILDCACHE_COMPRESS_FORMAT: ZSTD | |
| BUILDCACHE_DEBUG: -1 | |
| BUILDCACHE_LOG_FILE: "" | |
| jobs: | |
| cpp_python: | |
| name: ${{ matrix.name }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - name: 'Windows static - C++/Python' | |
| os: windows-latest | |
| bindings_python: ON | |
| build_shared: OFF | |
| set_path: $env:Path="C:\libxml2\bin;C:\zlib\bin;"+$env:Path | |
| additional_cmake_options: -DLIBXML2_INCLUDE_DIR="C:\libxml2\include\libxml2" -DLIBXML2_LIBRARY="C:\libxml2\lib\libxml2.lib" -DZLIB_INCLUDE_DIR="C:\zlib\include" -DZLIB_LIBRARY="C:\zlib\lib\z_dll.lib" | |
| - name: 'Windows shared - C++/Python' | |
| os: windows-latest | |
| bindings_python: ON | |
| build_shared: ON | |
| set_path: $env:Path="C:\libxml2\bin;C:\zlib\bin;"+$env:Path | |
| additional_cmake_options: -DLIBXML2_INCLUDE_DIR="C:\libxml2\include\libxml2" -DLIBXML2_LIBRARY="C:\libxml2\lib\libxml2.lib" -DZLIB_INCLUDE_DIR="C:\zlib\include" -DZLIB_LIBRARY="C:\zlib\lib\z_dll.lib" | |
| - name: 'Linux static - C++' | |
| os: ubuntu-latest | |
| bindings_python: OFF | |
| build_shared: OFF | |
| - name: 'Linux shared - C++/Python' | |
| os: ubuntu-latest | |
| bindings_python: ON | |
| build_shared: ON | |
| - name: 'macOS static - C++ (Intel)' | |
| os: macos-13 | |
| bindings_python: OFF | |
| build_shared: OFF | |
| - name: 'macOS shared - C++/Python (Intel)' | |
| os: macos-13 | |
| bindings_python: ON | |
| build_shared: ON | |
| - name: 'macOS static - C++ (ARM)' | |
| os: macos-latest | |
| bindings_python: OFF | |
| build_shared: OFF | |
| - name: 'macOS shared - C++/Python (ARM)' | |
| os: macos-latest | |
| bindings_python: ON | |
| build_shared: ON | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install Python (if needed) | |
| if: ${{ matrix.bindings_python == 'ON' }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.13' | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Install buildcache | |
| uses: cscouto/buildcache-action@v1 | |
| with: | |
| cache_key: ${{ matrix.os }}-${{ matrix.build_shared }} | |
| - name: Configure MSVC (Windows only) | |
| if: ${{ runner.os == 'Windows' }} | |
| uses: ilammy/msvc-dev-cmd@v1 | |
| - name: Install libxml2 (Windows only) | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| Invoke-WebRequest -UseBasicParsing https://github.com/cellml/gha/releases/download/gha/libxml2.zip -OutFile libxml2.zip | |
| Expand-Archive -LiteralPath libxml2.zip -DestinationPath C:\ | |
| - name: Install SWIG (macOS only and if needed) | |
| if: ${{ runner.os == 'macOS' && matrix.bindings_python == 'ON' }} | |
| run: | | |
| brew install swig | |
| - name: Install zlib (Windows only) | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| Invoke-WebRequest -UseBasicParsing https://github.com/cellml/gha/releases/download/gha/zlib.zip -OutFile zlib.zip | |
| Expand-Archive -LiteralPath zlib.zip -DestinationPath C:\ | |
| - name: Configure libCellML | |
| run: | | |
| mkdir build | |
| cd build | |
| ${{ matrix.set_path }} | |
| cmake -G Ninja -DBINDINGS_PYTHON=${{ matrix.bindings_python }} -DBUILD_SHARED=${{ matrix.build_shared }} -DCOVERAGE=OFF -DLLVM_COVERAGE=OFF -DMEMCHECK=OFF -DUNIT_TESTS=ON ${{ matrix.additional_cmake_options }} .. | |
| - name: Build libCellML | |
| run: | | |
| cd build | |
| ninja | |
| - name: Unit testing | |
| run: | | |
| cd build | |
| ninja test | |
| javascript: | |
| name: JavaScript | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| env: | |
| LIBCELLML_WASM_DIR: wasm | |
| LIBXML2_VERSION: 2.9.10 | |
| ZLIB_VERSION: 1.2.3 | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Install buildcache | |
| uses: cscouto/buildcache-action@v1 | |
| - name: Install Emscripten | |
| run: | | |
| brew install --overwrite emscripten | |
| - name: Set up the build directory | |
| run: | | |
| mkdir build | |
| - name: Build zlib | |
| run: | | |
| cd build | |
| ZLIB_BUILD_DIR=zlib-wasm | |
| git clone https://github.com/OpenCMISS-Dependencies/zlib.git -b v${ZLIB_VERSION} | |
| mkdir ${ZLIB_BUILD_DIR} | |
| emcmake cmake -G Ninja -S zlib -B ${ZLIB_BUILD_DIR} -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=~/${LIBCELLML_WASM_DIR} -DBUILD_SHARED_LIBS=OFF | |
| cmake --build ${ZLIB_BUILD_DIR} | |
| cmake --install ${ZLIB_BUILD_DIR} | |
| - name: Build libxml2 | |
| run: | | |
| cd build | |
| LIBXML2_BUILD_DIR=libxml2-wasm | |
| git clone https://github.com/OpenCMISS-Dependencies/libxml2.git -b v${LIBXML2_VERSION} | |
| mkdir ${LIBXML2_BUILD_DIR} | |
| emcmake cmake -G Ninja -S libxml2 -B ${LIBXML2_BUILD_DIR} -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=~/${LIBCELLML_WASM_DIR} -DZLIB_DIR=~/${LIBCELLML_WASM_DIR}/lib/cmake/ZLIB-${ZLIB_VERSION} -DBUILD_SHARED_LIBS=OFF -DLIBXML2_WITH_ICONV=OFF -DLIBXML2_WITH_LZMA=OFF -DLIBXML2_WITH_PYTHON=OFF -DLIBXML2_WITH_TESTS=OFF -DLIBXML2_WITH_PROGRAMS=OFF | |
| cmake --build ${LIBXML2_BUILD_DIR} | |
| cmake --install ${LIBXML2_BUILD_DIR} | |
| - name: Build libCellML | |
| run: | | |
| cd build | |
| mkdir ${LIBCELLML_WASM_DIR} | |
| emcmake cmake -G Ninja -S .. -B ${LIBCELLML_WASM_DIR} -DLibXml2_DIR=~/${LIBCELLML_WASM_DIR}/lib/cmake/libxml2-${LIBXML2_VERSION} -DBUILD_TYPE=Release | |
| cmake --build ${LIBCELLML_WASM_DIR} | |
| - name: Unit testing | |
| run: | | |
| cd build | |
| cmake --build ${LIBCELLML_WASM_DIR} --target jest_test | |
| code_formatting: | |
| name: Code formatting | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install ClangFormat | |
| run: | | |
| sudo apt update | |
| sudo apt install clang-format | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Configure libCellML | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -G Ninja .. | |
| - name: Code formatting | |
| run: | | |
| cd build | |
| ninja test_clang_format | |
| coverage: | |
| name: Code coverage | |
| runs-on: macos-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Install buildcache | |
| uses: cscouto/buildcache-action@v1 | |
| - name: Install LLVM | |
| run: | | |
| brew install --overwrite llvm | |
| echo 'export PATH="/opt/homebrew/opt/llvm/bin:$PATH"' >> ~/.bash_profile | |
| - name: Configure libCellML | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -G Ninja -DBINDINGS_PYTHON=OFF .. | |
| - name: Code coverage | |
| run: | | |
| cd build | |
| ninja llvm_coverage | |
| if [ `ninja llvm_coverage | grep TOTAL | sed 's/ /\n/g' | grep "100.00%" | wc -l | sed 's/ //g'` -eq 4 ]; then exit 0; else exit 1; fi | |
| memory_leaks: | |
| name: Memory leaks | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Install buildcache | |
| uses: cscouto/buildcache-action@v1 | |
| - name: Install Valgrind | |
| run: | | |
| sudo apt update | |
| sudo apt install valgrind | |
| - name: Configure libCellML | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -G Ninja -DBINDINGS_PYTHON=OFF .. | |
| - name: Memory leaks | |
| run: | | |
| cd build | |
| ninja memcheck | |
| documentation: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| steps: | |
| - name: Check out libCellML | |
| uses: actions/checkout@v4 | |
| - name: Install CMake and Ninja | |
| uses: lukka/get-cmake@latest | |
| - name: Install buildcache | |
| uses: cscouto/buildcache-action@v1 | |
| - name: Install Doxygen | |
| run: | | |
| sudo apt update | |
| sudo apt install doxygen | |
| - name: Install Sphinx | |
| run: | | |
| pip3 install sphinx | |
| - name: Configure libCellML | |
| run: | | |
| mkdir build | |
| cd build | |
| cmake -G Ninja -DBINDINGS_PYTHON=OFF .. | |
| - name: Documentation | |
| run: | | |
| cd build | |
| ninja docs |