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| cluster_roi | ||
| =========== | ||
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| #### pyClusterROI_test.py | ||
| # Copyright (C) 2010 R. Cameron Craddock ([email protected]) | ||
| # | ||
| # This script is a part of the pyClusterROI python toolbox for the spatially | ||
| # constrained clustering of fMRI data. It is a demonstration of how to use the | ||
| # toolbox and a regression test to make sure that the toolbox code works. | ||
| # | ||
| # For more information refer to: | ||
| # | ||
| # Craddock, R. C.; James, G. A.; Holtzheimer, P. E.; Hu, X. P. & Mayberg, H. S. | ||
| # A whole brain fMRI atlas generated via spatially constrained spectral | ||
| # clustering Human Brain Mapping, 2012, 33, 1914-1928 doi: 10.1002/hbm.21333. | ||
| # | ||
| # ARTICLE{Craddock2012, | ||
| # author = {Craddock, R C and James, G A and Holtzheimer, P E and Hu, X P and | ||
| # Mayberg, H S}, | ||
| # title = {{A whole brain fMRI atlas generated via spatially constrained | ||
| # spectral clustering}}, | ||
| # journal = {Human Brain Mapping}, | ||
| # year = {2012}, | ||
| # volume = {33}, | ||
| # pages = {1914--1928}, | ||
| # number = {8}, | ||
| # address = {Department of Neuroscience, Baylor College of Medicine, Houston, | ||
| # TX, United States}, | ||
| # pmid = {21769991}, | ||
| # } | ||
| # | ||
| # Documentation, updated source code and other information can be found at the | ||
| # NITRC web page: http://www.nitrc.org/projects/cluster_roi/ and on github at | ||
| # https://github.com/ccraddock/cluster_roi | ||
| # | ||
| # | ||
| # This program is free software: you can redistribute it and/or modify | ||
| # it under the terms of the GNU General Public License as published by | ||
| # the Free Software Foundation, either version 3 of the License, or | ||
| # (at your option) any later version. | ||
| # | ||
| # This program is distributed in the hope that it will be useful, | ||
| # but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| # MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| # GNU General Public License for more details. | ||
| # | ||
| # You should have received a copy of the GNU General Public License | ||
| # along with this program. If not, see <http://www.gnu.org/licenses/>. | ||
| #### | ||
|
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||
|
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| # this scripts requires NumPy (numpy.scipy.org), SciPy (www.scipy.org), and | ||
| # NiBabel (http://niftilib.sourceforge.net/pynifti/) and the pyClusterROI | ||
| # toolbox to be installed in a directory that is accessible through PythonPath | ||
| pyClusterROI_test.py | ||
| Copyright (C) 2010 R. Cameron Craddock ([email protected]) | ||
|
|
||
| This script is a part of the pyClusterROI python toolbox for the spatially | ||
| constrained clustering of fMRI data. It is a demonstration of how to use the | ||
| toolbox and a regression test to make sure that the toolbox code works. | ||
|
|
||
| For more information refer to: | ||
|
|
||
| Craddock, R. C.; James, G. A.; Holtzheimer, P. E.; Hu, X. P. & Mayberg, H. S. | ||
| A whole brain fMRI atlas generated via spatially constrained spectral | ||
| clustering Human Brain Mapping, 2012, 33, 1914-1928 doi: 10.1002/hbm.21333. | ||
|
|
||
| ARTICLE{Craddock2012, | ||
| author = {Craddock, R C and James, G A and Holtzheimer, P E and Hu, X P and | ||
| Mayberg, H S}, | ||
| title = {{A whole brain fMRI atlas generated via spatially constrained | ||
| spectral clustering}}, | ||
| journal = {Human Brain Mapping}, | ||
| year = {2012}, | ||
| volume = {33}, | ||
| pages = {1914--1928}, | ||
| number = {8}, | ||
| address = {Department of Neuroscience, Baylor College of Medicine, Houston, | ||
| TX, United States}, | ||
| pmid = {21769991}, | ||
| } | ||
|
|
||
| Documentation, updated source code and other information can be found at the | ||
| NITRC web page: http://www.nitrc.org/projects/cluster_roi/ and on github at | ||
| https://github.com/ccraddock/cluster_roi | ||
|
|
||
|
|
||
| This program is free software: you can redistribute it and/or modify | ||
| it under the terms of the GNU General Public License as published by | ||
| the Free Software Foundation, either version 3 of the License, or | ||
| (at your option) any later version. | ||
|
|
||
| This program is distributed in the hope that it will be useful, | ||
| but WITHOUT ANY WARRANTY; without even the implied warranty of | ||
| MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the | ||
| GNU General Public License for more details. | ||
|
|
||
| You should have received a copy of the GNU General Public License | ||
| along with this program. If not, see <http://www.gnu.org/licenses/>. | ||
|
|
||
| This library requires [NumPy](http://numpy.scipy.org), [SciPy](http://www.scipy.org), and [NiBabel](http://nipy.sourceforge.net/nibabel). | ||
|
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| Please refer to pyClusterROI_test.py for detailed instructions on how to use the code. This script can be executed using [test data.](https://www.nitrc.org/frs/downloadlink.php/3719) |