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25 Open 12 Closed
25 Open 12 Closed
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Issues list

Sort out het_metrics.log file enhancement New feature or request v0.3.0 Required for Roodmus v0.3.0
#37 opened Mar 13, 2024 by JatGreer
@JatGreer
Setup sphinx docs documentation Improvements or additions to documentation v0.3.0 Required for Roodmus v0.3.0
#35 opened Mar 6, 2024 by JatGreer
@MJoosten @JatGreer
2
integration test for heterogeneity module enhancement New feature or request v0.3.0 Required for Roodmus v0.3.0
#33 opened Mar 6, 2024 by MJoosten
@JatGreer
plot_ctf incorrect CTF bug Something isn't working v0.3.0 Required for Roodmus v0.3.0
#31 opened Feb 29, 2024 by MJoosten
@MJoosten
Roodmus v0.3.0 utilities
#28 opened Feb 21, 2024 by JatGreer
Parameters for noisy, radiation damaged, inelastic scattering-inclusive, fractionated dataset generation
#26 opened Feb 21, 2024 by JatGreer
power spectra in synthetic data understanding Parakeet Information about understanding how simulation works "under the hood"
#25 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
dose fractionation and beam induced motion understanding Parakeet Information about understanding how simulation works "under the hood"
#24 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
inelastic scattering models understanding Parakeet Information about understanding how simulation works "under the hood"
#23 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
MTF generation and e-/A^2/second dependence in implementation (also relation to DQE) understanding Parakeet Information about understanding how simulation works "under the hood"
#22 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
CTF simulation understanding Parakeet Information about understanding how simulation works "under the hood"
#21 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
Beam damage model and implementation understanding Parakeet Information about understanding how simulation works "under the hood"
#20 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
Generation of the simulated Gaussian random field (GRF) ice model understanding Parakeet Information about understanding how simulation works "under the hood"
#19 opened Feb 20, 2024 by JatGreer More complete understanding of Parakeet implementation (with source code)
pandas compatibility documentation Improvements or additions to documentation
#18 opened Dec 13, 2023 by MJoosten
@MJoosten
1
Add analysis tests for per-particle defoci and 1-to-1 matching labelling
#17 opened Nov 28, 2023 by JatGreer
@JatGreer
Refactor num_ugraphs to be implemented within analysis object. This resolves unnecessary matching of particles in all ugraphs in a metadata file. enhancement New feature or request v0.3.0 Required for Roodmus v0.3.0
#16 opened Nov 28, 2023 by JatGreer
@MJoosten @JatGreer
add .cff file (for easy citation) with doi to repo
#15 opened Nov 28, 2023 by JatGreer
@JatGreer
add CONTRIBUTING.md to repo
#14 opened Nov 28, 2023 by JatGreer
@JatGreer
Inconsistent naming convention of analysis outputs (basename of metafile) enhancement New feature or request v0.3.0 Required for Roodmus v0.3.0
#13 opened Nov 28, 2023 by JatGreer
@MJoosten @JatGreer
1
Update plot formatting v0.3.0 Required for Roodmus v0.3.0
#12 opened Nov 28, 2023 by JatGreer
@MJoosten
1
Look into cisTEM for micrograph simulation enhancement New feature or request wontfix This will not be worked on
#11 opened Nov 28, 2023 by JatGreer
1
Particle distribution in micrographs bug Something isn't working understanding Parakeet Information about understanding how simulation works "under the hood" v0.3.0 Required for Roodmus v0.3.0
#7 opened Nov 28, 2023 by JatGreer
@JatGreer
determine particle radius script enhancement New feature or request v0.4.0 Required for Roodmus v0.4.0
#6 opened Nov 28, 2023 by JatGreer
@JatGreer
Starfile writing via gemmi/ccpem-pipeliner v0.3.0 Required for Roodmus v0.3.0
#4 opened Nov 28, 2023 by JatGreer
@MJoosten
5
Add utility to allow user choice of whether to do in-plane rotation v0.4.0 Required for Roodmus v0.4.0
#2 opened Nov 28, 2023 by JatGreer
@MJoosten
5
ProTip! What’s not been updated in a month: updated:<2024-12-12.