amend

README.md

@@ -1,3 +1,3 @@
-#mixmax
+# mixmax
 
-A python tool to develop cost efficient and robust multiplexing strategies for single-cell genomics and transcriptomics data that allows sample identification after demultiplexing.
+A python tool to develop cost efficient and robust multiplexing strategies for single-cell genomics and transcriptomics data that allows sample identification after demultiplexing.

benchmarking_pipeline/README.md

@@ -16,7 +16,7 @@ To run the pipeline on a HPC-cluster using slurm, run the command
 The pipeline runs with
 
 * `python=3.12`
-* `numpy=1.26``
+* `numpy=1.26`
 * `pandas=2.1`
 
-All other dependencies will be installed automatically upon first execution of the snakemake pipeline. Note that this requires an internet connection. If internet connection is only available on the login nodes of the HPC cluster, the installation can be run on the login node with the command `snakemake --configfile config/config_{seed}.yaml --software-deployment-method conda --conda-create-envs-only` .
+All other dependencies will be installed automatically upon first execution of the snakemake pipeline. Note that this requires an internet connection. If internet connection is only available on the login nodes of the HPC cluster, the installation can be run on the login node with the command `snakemake --configfile config/config_{seed}.yaml --software-deployment-method conda --conda-create-envs-only` .

mixmax/README.md

@@ -1,4 +1,4 @@
-#mixmax
+# mixmax
 
 * `create_demultiplexing_scheme.py` takes the number of samples and the maximal pool size as input and outputs a demultiplexin scheme.
 
@@ -16,4 +16,4 @@
   * `pool_scheme` expect a yaml-file as output by `create_demultiplexing_scheme.py`.
   * `--output_plot` takes the path to which a diagnostic heatmap will be saves to.
   * `--output` expect the path to the `sample_assignment.yaml` file which specifies the sample identification in human readable format.
-  * `--robust` must be specified as in `create_demultiplexing_scheme.py`.
+  * `--robust` must be specified as in `create_demultiplexing_scheme.py`.