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Update README
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dialvarezs committed Sep 5, 2024
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Expand Up @@ -48,5 +48,5 @@ Uses Dorado for basecalling and demultiplexing.
## Considerations

- The pipeline is compatible with SLURM clusters; use `-profile slurm`.
- GPU resources are required for basecalling. On SLURM, ensure jobs request GPUs with the `--gres=gpu:X` option.
- GPU resources are required for basecalling. On SLURM, this pipeline will send jobs requesting GPUs with the `--gres=gpu:X` option.
- You can provide extra args to dorado basecalling and demultiplexing using `ext.args`.

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