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@@ -1,9 +1,10 @@ | ||
name: Full Tests | ||
on: | ||
schedule: | ||
- cron: "0 0 * * *" # daily | ||
pull_request: | ||
workflow_dispatch: | ||
workflow_run: | ||
workflows: [update-testing-data] | ||
types: [completed] | ||
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jobs: | ||
run: | ||
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@@ -29,18 +30,17 @@ jobs: | |
pip install pytest-xdist | ||
git config --global user.email "[email protected]" | ||
git config --global user.name "CI Almighty" | ||
pip install wheel # needed for scanimage | ||
pip install wheel==0.41.2 # needed for scanimage | ||
- name: Install roiextractors with minimal requirements | ||
run: pip install .[test] | ||
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- name: Run minimal tests | ||
run: pytest tests/test_internals -n auto --dist loadscope | ||
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- name: Test full installation (-e needed for codecov report) | ||
run: pip install -e .[full] | ||
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- name: Get ophys_testing_data current head hash | ||
id: ophys | ||
run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" | ||
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@@ -50,17 +50,6 @@ jobs: | |
with: | ||
path: ./ophys_testing_data | ||
key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | ||
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | ||
name: Install and configure AWS CLI | ||
run: | | ||
pip install awscli==1.25.27 | ||
aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | ||
name: Download data from S3 | ||
run: aws s3 cp --recursive s3://${{ secrets.S3_GIN_BUCKET }}//ophys_testing_data ./ophys_testing_data | ||
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- name: Run full pytest with coverage | ||
run: pytest -n auto --dist loadscope --cov=./ --cov-report xml:./codecov.xml | ||
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Original file line number | Diff line number | Diff line change |
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@@ -1,5 +1,7 @@ | ||
name: Update testing data | ||
name: update-testing-data | ||
on: | ||
schedule: | ||
- cron: "0 0 * * *" # daily | ||
workflow_dispatch: | ||
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jobs: | ||
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@@ -24,7 +26,7 @@ jobs: | |
pip install -U pip | ||
git config --global user.email "[email protected]" | ||
git config --global user.name "CI Almighty" | ||
pip install wheel # needed for scanimage | ||
pip install wheel==0.41.2 # needed for scanimage | ||
- name: Get ophys_testing_data current head hash | ||
id: ophys | ||
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@@ -38,7 +40,7 @@ jobs: | |
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | ||
name: Install and configure AWS CLI | ||
run: | | ||
pip install awscli==1.25.27 | ||
pip install awscli==1.29.56 | ||
aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} | ||
aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} | ||
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | ||
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