fix read the docs and setup paths

.readthedocs.yml

@@ -7,9 +7,10 @@ build:
 
 python:
   install:
-    - requirements: requirements-rtd.txt
     - method: pip
       path: .
+      extra_requirements:
+        - docs
 
 sphinx:
   configuration: docs/source/conf.py

pyproject.toml

@@ -62,7 +62,7 @@ test = [
     "spikeinterface>=0.100.7",
     "pytest-xdist"
 ]
-rtd = [
+docs = [
     "Jinja2",
     "Sphinx",
     "sphinx_rtd_theme",

tests/setup_paths.py

@@ -1,31 +1,41 @@
 import os
-import json
+import tempfile
 from pathlib import Path
-from tempfile import mkdtemp
+from shutil import copy
 
-import pytest
+from neuroconv.utils import load_dict_from_file
 
+# Output by default to a temporary directory
+OUTPUT_PATH = Path(tempfile.mkdtemp())
 
-file_path = Path(__file__).parent / "gin_test_config.json"
 
-with open(file=file_path) as f:
-    test_config_dict = json.load(f)
+# Load the configuration for the data tests
+
 
 if os.getenv("CI"):
     LOCAL_PATH = Path(".")  # Must be set to "." for CI
     print("Running GIN tests on Github CI!")
 else:
     # Override LOCAL_PATH in the `gin_test_config.json` file to a point on your system that contains the dataset folder
     # Use DANDIHub at hub.dandiarchive.org for open, free use of data found in the /shared/catalystneuro/ directory
+    test_config_path = Path(__file__).parent / "gin_test_config.json"
+    config_file_exists = test_config_path.exists()
+    if not config_file_exists:
+
+        root = test_config_path.parent.parent
+        base_test_config_path = root / "base_gin_test_config.json"
+
+        test_config_path.parent.mkdir(parents=True, exist_ok=True)
+        copy(src=base_test_config_path, dst=test_config_path)
+
+    test_config_dict = load_dict_from_file(test_config_path)
     LOCAL_PATH = Path(test_config_dict["LOCAL_PATH"])
-    print("Running GIN tests locally!")
+
+    if test_config_dict["SAVE_OUTPUTS"]:
+        OUTPUT_PATH = LOCAL_PATH / "neuroconv_test_outputs"
+        OUTPUT_PATH.mkdir(exist_ok=True, parents=True)
+
 
 OPHYS_DATA_PATH = LOCAL_PATH / "ophys_testing_data"
-if not OPHYS_DATA_PATH.exists():
-    pytest.fail(f"No folder found in location: {OPHYS_DATA_PATH}!")
 
-if test_config_dict["SAVE_OUTPUTS"]:
-    OUTPUT_PATH = LOCAL_PATH / "example_nwb_output"
-    OUTPUT_PATH.mkdir(exist_ok=True)
-else:
-    OUTPUT_PATH = Path(mkdtemp())
+TEXT_DATA_PATH = Path(__file__).parent.parent.parent / "tests" / "test_text"