Skip to content
Deploy PR Tests

Add extractor for BioFormats (CXD) #8

Sign in to view logs

Add extractor for BioFormats (CXD)

Add extractor for BioFormats (CXD) #8

Triggered via pull request June 5, 2024 09:45
@weiglszonjaweiglszonja
synchronize #338
add_bioformats
Status Failure
Total duration 6m 27s
Artifacts –

deploy_pr_tests.yaml

on: pull_request
Matrix: update-testing-data / run
Matrix: dev-tests / run
Matrix: run-tests / run
Fit to window
Zoom out
Zoom in

Annotations

16 errors and 72 warnings
run-tests / Full tests on macos-latest with Python 3.11
Process completed with exit code 1.
run-tests / Full tests on ubuntu-latest with Python 3.10
Process completed with exit code 1.
run-tests / Full tests on ubuntu-latest with Python 3.11
Process completed with exit code 1.
run-tests / Full tests on ubuntu-latest with Python 3.9
Process completed with exit code 1.
run-tests / Full tests on ubuntu-latest with Python 3.12
Process completed with exit code 1.
run-tests / Full tests on macos-13 with Python 3.10
Process completed with exit code 1.
run-tests / Full tests on macos-latest with Python 3.10
Process completed with exit code 1.
run-tests / Full tests on macos-13 with Python 3.12
Process completed with exit code 1.
run-tests / Full tests on macos-13 with Python 3.11
Process completed with exit code 1.
run-tests / Full tests on macos-latest with Python 3.12
Process completed with exit code 1.
run-tests / Full tests on windows-latest with Python 3.11
Process completed with exit code 1.
run-tests / Full tests on windows-latest with Python 3.10
Process completed with exit code 1.
run-tests / Full tests on windows-latest with Python 3.12
Process completed with exit code 1.
run-tests / Full tests on windows-latest with Python 3.9
Process completed with exit code 1.
run-tests / Full tests on macos-latest with Python 3.9
Process completed with exit code 1.
run-tests / Full tests on macos-13 with Python 3.9
Process completed with exit code 1.
update-testing-data / Update testing data on macos-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
update-testing-data / Update testing data on macos-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
update-testing-data / Update testing data on macos-latest
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
update-testing-data / Update testing data on ubuntu-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
update-testing-data / Update testing data on ubuntu-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
update-testing-data / Update testing data on ubuntu-latest
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
update-testing-data / Update testing data on macos-13
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
update-testing-data / Update testing data on macos-13
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
update-testing-data / Update testing data on macos-13
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
update-testing-data / Update testing data on windows-latest
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
update-testing-data / Update testing data on windows-latest
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, actions/setup-python@v2, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
update-testing-data / Update testing data on windows-latest
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-latest with Python 3.11
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-latest with Python 3.11
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-latest with Python 3.11
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on ubuntu-latest with Python 3.10
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on ubuntu-latest with Python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on ubuntu-latest with Python 3.10
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on ubuntu-latest with Python 3.11
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on ubuntu-latest with Python 3.11
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on ubuntu-latest with Python 3.11
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on ubuntu-latest with Python 3.9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on ubuntu-latest with Python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on ubuntu-latest with Python 3.9
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on ubuntu-latest with Python 3.12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on ubuntu-latest with Python 3.12
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on ubuntu-latest with Python 3.12
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-13 with Python 3.10
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-13 with Python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-13 with Python 3.10
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-latest with Python 3.10
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-latest with Python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-latest with Python 3.10
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-13 with Python 3.12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-13 with Python 3.12
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-13 with Python 3.12
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-13 with Python 3.11
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-13 with Python 3.11
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-13 with Python 3.11
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-latest with Python 3.12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-latest with Python 3.12
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-latest with Python 3.12
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on windows-latest with Python 3.11
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on windows-latest with Python 3.11
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on windows-latest with Python 3.11
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on windows-latest with Python 3.10
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on windows-latest with Python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on windows-latest with Python 3.10
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on windows-latest with Python 3.12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on windows-latest with Python 3.12
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on windows-latest with Python 3.12
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
dev-tests / Ubuntu tests with Python 3.10
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
dev-tests / Ubuntu tests with Python 3.10
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
dev-tests / Ubuntu tests with Python 3.10
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
dev-tests / Ubuntu tests with Python 3.9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
dev-tests / Ubuntu tests with Python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
dev-tests / Ubuntu tests with Python 3.9
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on windows-latest with Python 3.9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on windows-latest with Python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-latest with Python 3.9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-latest with Python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on windows-latest with Python 3.9
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-latest with Python 3.9
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
dev-tests / Ubuntu tests with Python 3.11
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
dev-tests / Ubuntu tests with Python 3.11
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
dev-tests / Ubuntu tests with Python 3.11
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
dev-tests / Ubuntu tests with Python 3.12
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
dev-tests / Ubuntu tests with Python 3.12
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
dev-tests / Ubuntu tests with Python 3.12
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/
run-tests / Full tests on macos-13 with Python 3.9
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/cache@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
run-tests / Full tests on macos-13 with Python 3.9
The following actions uses node12 which is deprecated and will be forced to run on node16: actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/
run-tests / Full tests on macos-13 with Python 3.9
The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/