update-testing-data #14
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name: update-testing-data | |
on: | |
schedule: | |
- cron: "0 0 * * *" # daily | |
workflow_dispatch: | |
jobs: | |
run: | |
name: Update testing data on ${{ matrix.os }} | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-latest, windows-latest, macos-latest] | |
steps: | |
- uses: s-weigand/setup-conda@v1 | |
- uses: actions/checkout@v2 | |
- run: git fetch --prune --unshallow --tags | |
- name: Setup Python 3.11 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.11 | |
- name: Global Setup | |
run: | | |
pip install -U pip | |
git config --global user.email "[email protected]" | |
git config --global user.name "CI Almighty" | |
pip install wheel==0.41.2 # needed for scanimage | |
- name: Get ophys_testing_data current head hash | |
id: ophys | |
run: echo "::set-output name=HASH_OPHYS_DATASET::$(git ls-remote https://gin.g-node.org/CatalystNeuro/ophys_testing_data.git HEAD | cut -f1)" | |
- name: Cache ophys dataset - ${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
uses: actions/cache@v2 | |
id: cache-ophys-datasets | |
with: | |
path: ./ophys_testing_data | |
key: ophys-datasets-042023-${{ matrix.os }}-${{ steps.ophys.outputs.HASH_OPHYS_DATASET }} | |
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | |
name: Install and configure AWS CLI | |
run: | | |
pip install awscli==1.29.56 | |
aws configure set aws_access_key_id ${{ secrets.AWS_ACCESS_KEY_ID }} | |
aws configure set aws_secret_access_key ${{ secrets.AWS_SECRET_ACCESS_KEY }} | |
- if: steps.cache-ophys-datasets.outputs.cache-hit == false | |
name: Download data from S3 | |
run: aws s3 cp --recursive s3://${{ secrets.S3_GIN_BUCKET }}//ophys_testing_data ./ophys_testing_data |