[Cloud Deployment IVb] Rclone in AWS on EFS

[CodyCBakerPhD]

@pauladkisson Can you setup your Google Drive in accordance with these instructions? (just copy over https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/master/spikeglx/Noise4Sam_g0 as shown) let me know when that's ready so I can try to deploy the CI for this

[CodyCBakerPhD]

@pauladkisson And while you're at it, could you include the phy folder in anticipating of using the test specification files? https://github.com/catalystneuro/neuroconv/blob/main/tests/test_on_data/test_yaml/conversion_specifications/GIN_conversion_specification.yml#L53

[pauladkisson]

@pauladkisson Can you setup your Google Drive in accordance with these instructions? (just copy over https://gin.g-node.org/NeuralEnsemble/ephy_testing_data/src/master/spikeglx/Noise4Sam_g0 as shown) let me know when that's ready so I can try to deploy the CI for this

Done!

[pauladkisson]

@pauladkisson And while you're at it, could you include the phy folder in anticipating of using the test specification files? https://github.com/catalystneuro/neuroconv/blob/main/tests/test_on_data/test_yaml/conversion_specifications/GIN_conversion_specification.yml#L53

Where exactly does the phy folder go? Under testing_rclone_spikeglx/ci_tests? Or somewhere else?

[CodyCBakerPhD]

Where exactly does the phy folder go? Under testing_rclone_spikeglx/ci_tests? Or somewhere else?

Good question - actually, in light of that, I've modified the structure shown in the docstring

Sorry about that, could you change it when you get a chance?

[CodyCBakerPhD]

@h-mayorquin This is ready now

Proof of tests passing: https://github.com/catalystneuro/neuroconv/actions/runs/11085279132/job/30801565771

[CodyCBakerPhD]

Had to fix this, was not tested before now

[CodyCBakerPhD]

Turns out these are really restrictive, had a fix this using a GHCR image source

[CodyCBakerPhD]

After internal debate, I decided to roll this back since even latest images will be pulled, not at time of job definition declaration, but rather at time of instance run (which could be well after)

Should reduce the amount of spam for the normal AWS tests

[CodyCBakerPhD]

@h-mayorquin Also leaving this as a note:

You may want to include job definition cleanup in the tearDown step. I'm not for the time being because there is no cost and it contains provenance with very useful debug info (and the basic non-EFS test should only create one for all time, should even theoretically re-use without making new revisions). But EFS mounting is a very important association with it so there is technically one job definition per EFS related test

Or you can just clean them up in a separate task periodically (monthly?), it's only a couple lines of boto3 to find the names that match some pattern and deregister them

Also, there is a rare condition where if the test is interrupted via GitHub (therefore not triggering the natural tearDown) the EFS might not get cleaned up - I'm not worried about cost since even if you forget about it for these tests for weeks it'll still only be pennies (though you should check it from time to time just to be sure) - but instead the test assertion errors out due to multiple copies of EFS of the same name, so if this becomes a common annoyance I recommend adding a pre-step in the test case setup to clean any existing EFS of the expected name

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 90.69%. Comparing base (dcd248b) to head (cd958c6).
Report is 2 commits behind head on main.

Additional details and impacted files

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  Coverage   90.69%   90.69%           
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  Files         129      129           
  Lines        8186     8186           
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  Hits         7424     7424           
  Misses        762      762           

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