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catalystneuro · Jul 21, 2022 · d09aee6 · d09aee6
1 parent 68a41a5
commit d09aee6
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Showing 4 changed files with 7 additions and 7 deletions.
diff --git a/src/neuroconv/tools/yaml_conversion_specification/yaml_conversion_specification.py b/src/neuroconv/tools/yaml_conversion_specification/yaml_conversion_specification.py
@@ -112,7 +112,7 @@ def run_conversion_from_yaml(
     global_data_interfaces = specification.get("data_interfaces")
     nwb_conversion_tools = import_module(
         name=".",
-        package="nwb_conversion_tools",  # relative import, but named and referenced as if it were absolute
+        package="neuroconv",  # relative import, but named and referenced as if it were absolute
     )
     file_counter = 0
     for experiment in specification["experiments"].values():

diff --git a/tests/test_on_data/test_gin_icephys.py b/tests/test_on_data/test_gin_icephys.py
@@ -4,13 +4,13 @@
 from pathlib import Path
 from datetime import datetime
 
-import neo
 import pytest
 import numpy.testing as npt
 from pynwb import NWBHDF5IO
 
 from neuroconv import NWBConverter, AbfInterface
 from neuroconv.utils import load_dict_from_file
+from neuroconv.tools.neo import get_number_of_segments, get_number_of_electrodes
 
 try:
     from parameterized import parameterized, param
@@ -67,8 +67,8 @@ def test_convert_abf_to_nwb(self, data_interface, interface_kwargs):
         from neo import AxonIO
 
         neo_reader = AxonIO(filename=interface_kwargs["file_paths"][0])
-        n_segments = neo.get_number_of_segments(neo_reader, block=0)
-        n_electrodes = neo.get_number_of_electrodes(neo_reader)
+        n_segments = get_number_of_segments(neo_reader, block=0)
+        n_electrodes = get_number_of_electrodes(neo_reader)
 
         nwbfile_path = str(self.savedir / f"{data_interface.__name__}.nwb")
 

diff --git a/tests/test_on_data/test_yaml_conversion_specification.py b/tests/test_on_data/test_yaml_conversion_specification.py
@@ -20,7 +20,7 @@ class TestYAMLConversionSpecification(TestCase):
     def test_validate_example_specification(self):
         path_to_test_yml_files = Path(__file__).parent / "conversion_specifications"
         yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification.yml"
-        schema_folder = path_to_test_yml_files.parent.parent.parent / "src" / "nwb_conversion_tools" / "schemas"
+        schema_folder = path_to_test_yml_files.parent.parent.parent / "src" / "neuroconv" / "schemas"
         specification_schema = load_dict_from_file(
             file_path=schema_folder / "yaml_conversion_specification_schema.json"
         )

diff --git a/tests/test_on_data/test_yaml_conversion_specification_cli.py b/tests/test_on_data/test_yaml_conversion_specification_cli.py
@@ -19,7 +19,7 @@ def test_run_conversion_from_yaml_cli(self):
         yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification.yml"
         deploy_process(
             command=(
-                f"nwbct-run-conversion {yaml_file_path} "
+                f"neuroconv {yaml_file_path} "
                 f"--data-folder-path {DATA_PATH} --output-folder-path {self.test_folder} --overwrite"
             )
         )
@@ -55,7 +55,7 @@ def test_run_conversion_from_yaml_default_nwbfile_name(self):
         yaml_file_path = path_to_test_yml_files / "GIN_conversion_specification_missing_nwbfile_names.yml"
         deploy_process(
             command=(
-                f"nwbct-run-conversion {yaml_file_path} "
+                f"neuroconv {yaml_file_path} "
                 f"--data-folder-path {DATA_PATH} --output-folder-path {self.test_folder} --overwrite"
             )
         )