[pre-commit.ci] auto fixes from pre-commit.com hooks

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setup.py

@@ -1,6 +1,7 @@
 # -*- coding: utf-8 -*-
 from pathlib import Path
-from setuptools import setup, find_packages
+
+from setuptools import find_packages, setup
 
 requirements_file_path = Path(__file__).parent / "requirements.txt"
 with open(requirements_file_path) as file:

src/jazayeri_lab_to_nwb/watters/__init__.py

@@ -1,4 +1,7 @@
-from .wattersbehaviorinterface import WattersEyePositionInterface, WattersPupilSizeInterface
-from .watterstrialsinterface import WattersTrialsInterface
-from .wattersrecordinginterface import WattersDatRecordingInterface
+from .wattersbehaviorinterface import (
+    WattersEyePositionInterface,
+    WattersPupilSizeInterface,
+)
 from .wattersnwbconverter import WattersNWBConverter
+from .wattersrecordinginterface import WattersDatRecordingInterface
+from .watterstrialsinterface import WattersTrialsInterface

src/jazayeri_lab_to_nwb/watters/watters_convert_session.py

@@ -1,16 +1,16 @@
 """Primary script to run to convert an entire session for of data using the NWBConverter."""
-import os
 import datetime
 import glob
 import json
 import logging
+import os
 from pathlib import Path
 from typing import Union
 from uuid import uuid4
 from zoneinfo import ZoneInfo
 
 from neuroconv.tools.data_transfers import automatic_dandi_upload
-from neuroconv.utils import load_dict_from_file, dict_deep_update
+from neuroconv.utils import dict_deep_update, load_dict_from_file
 
 from jazayeri_lab_to_nwb.watters import WattersNWBConverter
 
@@ -64,6 +64,7 @@ def session_to_nwb(
     """
     if dandiset_id is not None:
         import dandi  # check importability
+
         assert os.getenv("DANDI_API_KEY"), (
             "Unable to find environment variable 'DANDI_API_KEY'. "
             "Please retrieve your token from DANDI and set this environment variable."
@@ -249,5 +250,5 @@ def session_to_nwb(
         output_dir_path=output_dir_path,
         stub_test=stub_test,
         overwrite=overwrite,
-        # dandiset_id = "000620", 
+        # dandiset_id = "000620",
     )

src/jazayeri_lab_to_nwb/watters/wattersbehaviorinterface.py

@@ -1,13 +1,13 @@
 """Primary classes for converting experiment-specific behavior."""
-import numpy as np
 from pathlib import Path
-from pynwb import NWBFile, TimeSeries
-from pynwb.behavior import SpatialSeries
-from hdmf.backends.hdf5 import H5DataIO
 
+import numpy as np
+from hdmf.backends.hdf5 import H5DataIO
 from neuroconv.basetemporalalignmentinterface import BaseTemporalAlignmentInterface
-from neuroconv.utils import DeepDict, FolderPathType, FilePathType
 from neuroconv.tools.nwb_helpers import get_module
+from neuroconv.utils import DeepDict, FilePathType, FolderPathType
+from pynwb import NWBFile, TimeSeries
+from pynwb.behavior import SpatialSeries
 
 
 class NumpyTemporalAlignmentMixin:

src/jazayeri_lab_to_nwb/watters/wattersnwbconverter.py

@@ -1,21 +1,24 @@
 """Primary NWBConverter class for this dataset."""
 import json
 import logging
-import numpy as np
-from typing import Optional
 from pathlib import Path
+from typing import Optional
 
+import numpy as np
 from neuroconv import NWBConverter
-from neuroconv.utils import FolderPathType
+from neuroconv.basetemporalalignmentinterface import BaseTemporalAlignmentInterface
 from neuroconv.datainterfaces import (
-    SpikeGLXRecordingInterface,
     KiloSortSortingInterface,
+    SpikeGLXRecordingInterface,
+)
+from neuroconv.datainterfaces.ecephys.baserecordingextractorinterface import (
+    BaseRecordingExtractorInterface,
+)
+from neuroconv.datainterfaces.ecephys.basesortingextractorinterface import (
+    BaseSortingExtractorInterface,
 )
-from neuroconv.datainterfaces.ecephys.baserecordingextractorinterface import BaseRecordingExtractorInterface
-from neuroconv.datainterfaces.ecephys.basesortingextractorinterface import BaseSortingExtractorInterface
-from neuroconv.basetemporalalignmentinterface import BaseTemporalAlignmentInterface
 from neuroconv.datainterfaces.text.timeintervalsinterface import TimeIntervalsInterface
-
+from neuroconv.utils import FolderPathType
 from spikeinterface.core.waveform_tools import has_exceeding_spikes
 from spikeinterface.curation import remove_excess_spikes
 

src/jazayeri_lab_to_nwb/watters/wattersrecordinginterface.py

@@ -1,15 +1,16 @@
 """Primary class for Watters Plexon probe data."""
-import os
 import json
-import numpy as np
-from pynwb import NWBFile
+import os
 from pathlib import Path
 from typing import Optional, Union
 
-from neuroconv.datainterfaces.ecephys.baserecordingextractorinterface import BaseRecordingExtractorInterface
-from neuroconv.utils import FilePathType
-
+import numpy as np
 import probeinterface as pi
+from neuroconv.datainterfaces.ecephys.baserecordingextractorinterface import (
+    BaseRecordingExtractorInterface,
+)
+from neuroconv.utils import FilePathType
+from pynwb import NWBFile
 from spikeinterface import BaseRecording
 
 
@@ -78,7 +79,6 @@ def __init__(
             values=[probe_name] * len(self.recording_extractor.channel_ids),
         )
 
-
     def get_metadata(self) -> dict:
         metadata = super().get_metadata()
         metadata["Ecephys"]["Device"] = [

src/jazayeri_lab_to_nwb/watters/watterstrialsinterface.py

@@ -1,14 +1,14 @@
 """Primary class for converting experiment-specific behavior."""
 import json
-import numpy as np
-import pandas as pd
 import warnings
 from pathlib import Path
-from pynwb import NWBFile
 from typing import Optional
 
+import numpy as np
+import pandas as pd
 from neuroconv.datainterfaces.text.timeintervalsinterface import TimeIntervalsInterface
-from neuroconv.utils import DeepDict, FolderPathType, FilePathType
+from neuroconv.utils import DeepDict, FilePathType, FolderPathType
+from pynwb import NWBFile
 
 
 class WattersTrialsInterface(TimeIntervalsInterface):