Merge pull request #104 from catalystneuro/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ repos:
     -   id: end-of-file-fixer
     -   id: trailing-whitespace
 -   repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 24.1.1
     hooks:
     -   id: black
         exclude: ^docs/

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/basedattainterface.py

@@ -1,4 +1,5 @@
 """Primary class for handling metadata non-specific to any other DataInterfaces."""
+
 from pathlib import Path
 
 import pandas as pd

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/basevideointerface.py

@@ -1,4 +1,5 @@
 """Base class for converting raw video data."""
+
 from pathlib import Path
 
 import numpy as np

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/behavioralsyllableinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting experiment-specific behavior."""
+
 import numpy as np
 import pandas as pd
 from pynwb import NWBFile

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_dataset.py

@@ -1,4 +1,5 @@
 """Convert the entire dataset."""
+
 import json
 from pathlib import Path
 from typing import Union

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/convert_session.py

@@ -1,4 +1,5 @@
 """Primary script to run to convert an entire session for of data using the NWBConverter."""
+
 import shutil
 import traceback
 from pathlib import Path

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/depthvideointerface.py

@@ -1,4 +1,5 @@
 """Primary class for converting raw depth video data."""
+
 from pynwb import NWBFile
 from .basevideointerface import BaseVideoInterface
 

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/fiberphotometryinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting fiber photometry data (dLight fluorescence)."""
+
 from typing import Union
 
 import pandas as pd

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/irvideointerface.py

@@ -1,4 +1,5 @@
 """Primary class for converting raw ir video data."""
+
 from pynwb import NWBFile
 from .basevideointerface import BaseVideoInterface
 

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/moseqextractinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting MoSeq Extraction data."""
+
 from pynwb import NWBFile
 import h5py
 import numpy as np

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/nwbconverter.py

@@ -1,4 +1,5 @@
 """Primary NWBConverter class for this dataset."""
+
 from neuroconv import NWBConverter
 from .fiberphotometryinterface import FiberPhotometryInterface
 from .optogeneticinterface import OptogeneticInterface

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/optogeneticinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting fiber photometry data (dLight fluorescence)."""
+
 # Standard Scientific Python
 import pandas as pd
 import numpy as np

src/datta_lab_to_nwb/markowitz_gillis_nature_2023/rawfiberphotometryinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting Raw fiber photometry data (dLight fluorescence) from the TDT system."""
+
 from pathlib import Path
 from typing import Union
 

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/convert_session.py

@@ -1,4 +1,5 @@
 """Primary script to run to convert an entire session for of data using the NWBConverter."""
+
 from pathlib import Path
 from typing import Union
 from neuroconv.utils import dict_deep_update, load_dict_from_file

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/hekinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting in-vitro photometry data."""
+
 from typing import Literal, Optional
 import numpy as np
 from pynwb import NWBFile

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_HEK/nwbconverter.py

@@ -1,4 +1,5 @@
 """Primary NWBConverter class for this dataset."""
+
 from neuroconv import NWBConverter
 from .hekinterface import HEKInterface
 

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_keypoint/convert_session.py

@@ -1,4 +1,5 @@
 """Primary script to run to convert an entire session for of data using the NWBConverter."""
+
 # Standard Library
 from pathlib import Path
 import shutil

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_keypoint/fiberphotometryinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting fiber photometry data (dLight fluorescence)."""
+
 # Standard Scientific Python
 import numpy as np
 import joblib

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_keypoint/irvideointerface.py

@@ -1,4 +1,5 @@
 """Base class for converting raw video data."""
+
 from pynwb import NWBFile
 import numpy as np
 from pathlib import Path

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_keypoint/keypointinterface.py

@@ -1,4 +1,5 @@
 """Primary class for converting experiment-specific behavior."""
+
 import numpy as np
 from pynwb import NWBFile
 from pynwb.image import RGBImage, Images

src/datta_lab_to_nwb/markowitz_gillis_nature_2023_keypoint/nwbconverter.py

@@ -1,4 +1,5 @@
 """Primary NWBConverter class for this dataset."""
+
 from neuroconv import NWBConverter
 from .fiberphotometryinterface import FiberPhotometryInterface
 from .irvideointerface import IRVideoInterface