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CodyCBakerPhD authored Aug 2, 2023
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This repository houses the modules used to convert IBL specific neurophysiology data in the open source [ONE](https://docs.internationalbrainlab.org/en/stable/03_tutorial.html) format (Alyx + ALF) into NWB data standard.

- __Alyx__: a data base that contains all the metadata associated with an experiment: session details, subject details, probe information etc. This data has a one-to-one mapping to supported metadata of NWB.
- __ALF__: format for storage of all the experimental data: electrophysiology time series (raw + processed), trials data, sorted spikes data, behavior (raw + processed), stimulus.


# How to convert processed-only data for BWM

From the first level of the repo as the working directory,

```
python ibl_to_nwb/updated_conversion/brainwide_map/convert_brainwide_map_processed_only_parallel.py
```

The script contains some values that might want to be changed, such as `number_of_parallel_jobs`, or `base_path` if not running on the DANDI Hub.

The block about skipping sessions already on DANDI would need to be commented out if a 'patch' conversion + new release is being performed.

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