Apply pre-commit fix

From the artifact of the previous workflow run

github_app_geo_project/configuration.py

@@ -101,13 +101,21 @@ def get_github_application(config: dict[str, Any], application_name: str) -> Git
 
 
 def get_github_project(
-    config: dict[str, Any], application: GithubApplication | str, owner: str, repository: str
+    config: dict[str, Any],
+    application: GithubApplication | str,
+    owner: str,
+    repository: str,
 ) -> GithubProject:
     """Get the Github Application by name."""
     objects = get_github_application(config, application) if isinstance(application, str) else application
 
     token = objects.integration.get_access_token(objects.integration.get_installation(owner, repository).id)
-    _LOGGER.debug("Generate token for %s/%s that expire at: %s", owner, repository, token.expires_at)
+    _LOGGER.debug(
+        "Generate token for %s/%s that expire at: %s",
+        owner,
+        repository,
+        token.expires_at,
+    )
     github_application = github.Github(login_or_token=token.token)
     repo = github_application.get_repo(f"{owner}/{repository}")
 
@@ -138,7 +146,8 @@ def get_configuration(
 
     return jsonmerge.merge(  # type: ignore[no-any-return]
         APPLICATION_CONFIGURATION.get("profiles", {}).get(
-            project_custom_configuration.get("profile", APPLICATION_CONFIGURATION.get("default-profile")), {}
+            project_custom_configuration.get("profile", APPLICATION_CONFIGURATION.get("default-profile")),
+            {},
         ),
         project_custom_configuration,
     )

github_app_geo_project/models.py

@@ -47,7 +47,10 @@ class Queue(Base):
         index=True,
     )
     created_at: Mapped[datetime] = mapped_column(
-        DateTime(timezone=True), nullable=False, server_default=sqlalchemy.sql.functions.now(), index=True
+        DateTime(timezone=True),
+        nullable=False,
+        server_default=sqlalchemy.sql.functions.now(),
+        index=True,
     )
     started_at: Mapped[datetime] = mapped_column(DateTime(timezone=True), nullable=True)
     finished_at: Mapped[datetime] = mapped_column(DateTime(timezone=True), nullable=True)
@@ -99,10 +102,15 @@ class Output(Base):
 
     id: Mapped[int] = mapped_column(Integer, primary_key=True, nullable=False, autoincrement=True)
     created_at: Mapped[datetime] = mapped_column(
-        DateTime(timezone=True), nullable=False, server_default=sqlalchemy.sql.functions.now(), index=True
+        DateTime(timezone=True),
+        nullable=False,
+        server_default=sqlalchemy.sql.functions.now(),
+        index=True,
     )
     status: Mapped[OutputStatus] = mapped_column(
-        Enum(OutputStatus, create_type=False, native_enum=False), nullable=False, index=True
+        Enum(OutputStatus, create_type=False, native_enum=False),
+        nullable=False,
+        index=True,
     )
     owner: Mapped[str] = mapped_column(Unicode, nullable=False)
     repository: Mapped[str] = mapped_column(Unicode, nullable=False, index=True)

github_app_geo_project/module/__init__.py

@@ -410,7 +410,10 @@ def transversal_status_from_json(self, data: dict[str, Any] | None) -> _TRANSVER
             try:
                 return generic_element(**data)  # type: ignore[no-any-return]
             except ValidationError:
-                _LOGGER.error("Invalid transversal status, try with empty transversal status: %s", data)
+                _LOGGER.error(
+                    "Invalid transversal status, try with empty transversal status: %s",
+                    data,
+                )
                 return generic_element()  # type: ignore[no-any-return]
         return data  # type: ignore[return-value]
 

github_app_geo_project/module/audit/__init__.py

@@ -90,7 +90,8 @@ def _process_error(
 
         output_url = urllib.parse.urljoin(context.service_url, f"output/{output_id}")
         issue_check.set_title(
-            key, f"{key}: {message} ([Error]({output_url}))" if message else f"{key} ([Error]({output_url}))"
+            key,
+            (f"{key}: {message} ([Error]({output_url}))" if message else f"{key} ([Error]({output_url}))"),
         )
     elif message:
         issue_check.set_title(key, f"{key}: {message}")
@@ -115,10 +116,20 @@ def _process_outdated(
     except github.GithubException as exception:
         if exception.status == 404:
             _LOGGER.debug("No SECURITY.md file in the repository")
-            _process_error(context, _OUTDATED, issue_check, message="No SECURITY.md file in the repository")
+            _process_error(
+                context,
+                _OUTDATED,
+                issue_check,
+                message="No SECURITY.md file in the repository",
+            )
         else:
             _LOGGER.exception("Error while getting SECURITY.md")
-            _process_error(context, _OUTDATED, issue_check, message="Error while getting SECURITY.md")
+            _process_error(
+                context,
+                _OUTDATED,
+                issue_check,
+                message="Error while getting SECURITY.md",
+            )
             raise
 
 
@@ -203,7 +214,8 @@ async def _process_snyk_dpkg(
                         ".github/dpkg-versions.yaml"
                     ):
                         await audit_utils.dpkg(
-                            context.module_config.get("dpkg", {}), local_config.get("dpkg", {})
+                            context.module_config.get("dpkg", {}),
+                            local_config.get("dpkg", {}),
                         )
 
                 body_md += "\n" if body_md else ""
@@ -215,7 +227,10 @@ async def _process_snyk_dpkg(
                 )
                 if diff_proc.returncode != 0:
                     proc = subprocess.run(  # nosec # pylint: disable=subprocess-run-check
-                        ["git", "diff"], timeout=30, capture_output=True, encoding="utf-8"
+                        ["git", "diff"],
+                        timeout=30,
+                        capture_output=True,
+                        encoding="utf-8",
                     )
                     message = module_utils.ansi_proc_message(proc)
                     message.title = "Changes to be committed"
@@ -245,7 +260,10 @@ async def _process_snyk_dpkg(
                             _LOGGER.error("Error while create commit or pull request")
                         else:
                             if pull_request is not None:
-                                issue_check.set_title(key, f"{key} ([Pull request]({pull_request.html_url}))")
+                                issue_check.set_title(
+                                    key,
+                                    f"{key} ([Pull request]({pull_request.html_url}))",
+                                )
                                 short_message.append(f"[Pull request]({pull_request.html_url})")
 
                 else:
@@ -337,7 +355,9 @@ def get_actions(self, context: module.GetActionContext) -> list[module.Action[_E
         if "SECURITY.md" in context.event_data.get("push", {}).get("files", []):
             return [
                 module.Action(
-                    priority=module.PRIORITY_CRON, data=_EventData(type="outdated"), title="outdated"
+                    priority=module.PRIORITY_CRON,
+                    data=_EventData(type="outdated"),
+                    title="outdated",
                 )
             ]
         results: list[module.Action[_EventData]] = []
@@ -355,7 +375,9 @@ def get_actions(self, context: module.GetActionContext) -> list[module.Action[_E
             if not old_check.is_checked("outdated") and new_check.is_checked("outdated"):
                 results.append(
                     module.Action(
-                        priority=module.PRIORITY_STANDARD, data=_EventData(type="outdated"), title="outdated"
+                        priority=module.PRIORITY_STANDARD,
+                        data=_EventData(type="outdated"),
+                        title="outdated",
                     )
                 )
             if not old_check.is_checked("snyk") and new_check.is_checked("snyk"):
@@ -366,7 +388,9 @@ def get_actions(self, context: module.GetActionContext) -> list[module.Action[_E
         if context.event_data.get("type") == "event" and context.event_data.get("name") == "daily":
             results.append(
                 module.Action(
-                    priority=module.PRIORITY_CRON, data=_EventData(type="outdated"), title="outdated"
+                    priority=module.PRIORITY_CRON,
+                    data=_EventData(type="outdated"),
+                    title="outdated",
                 )
             )
             snyk = True
@@ -382,7 +406,8 @@ def get_actions(self, context: module.GetActionContext) -> list[module.Action[_E
         return results
 
     async def process(
-        self, context: module.ProcessContext[configuration.AuditConfiguration, _EventData, _TransversalStatus]
+        self,
+        context: module.ProcessContext[configuration.AuditConfiguration, _EventData, _TransversalStatus],
     ) -> module.ProcessOutput[_EventData, _TransversalStatus]:
         """
         Process the action.

github_app_geo_project/module/audit/utils.py

@@ -128,7 +128,6 @@ async def _select_java_version(
     local_config: configuration.SnykConfiguration,
     env: dict[str, str],
 ) -> None:
-
     if not os.path.exists("gradlew"):
         return
 
@@ -211,7 +210,10 @@ async def _install_pipenv_dependencies(
     env: dict[str, str],
 ) -> None:
     proc = subprocess.run(  # nosec # pylint: disable=subprocess-run-check
-        ["git", "ls-files", "Pipfile", "*/Pipfile"], capture_output=True, encoding="utf-8", timeout=30
+        ["git", "ls-files", "Pipfile", "*/Pipfile"],
+        capture_output=True,
+        encoding="utf-8",
+        timeout=30,
     )
     if proc.returncode != 0:
         message = module_utils.ansi_proc_message(proc)
@@ -271,7 +273,10 @@ async def _install_poetry_dependencies(
                 [
                     "poetry",
                     "install",
-                    *local_config.get("poetry-install-arguments", config.get("poetry-install-arguments", [])),
+                    *local_config.get(
+                        "poetry-install-arguments",
+                        config.get("poetry-install-arguments", []),
+                    ),
                 ],
                 env,
                 int(os.environ.get("GHCI_PYTHON_INSTALL_TIMEOUT", "600")),
@@ -296,7 +301,8 @@ async def _snyk_monitor(
         "monitor",
         f"--target-reference={branch}",
         *local_config.get(
-            "monitor-arguments", config.get("monitor-arguments", configuration.SNYK_MONITOR_ARGUMENTS_DEFAULT)
+            "monitor-arguments",
+            config.get("monitor-arguments", configuration.SNYK_MONITOR_ARGUMENTS_DEFAULT),
         ),
     ]
     local_monitor_config = local_config.get("monitor", {})
@@ -345,7 +351,8 @@ async def _snyk_test(
         "snyk",
         "test",
         *local_config.get(
-            "test-arguments", config.get("test-arguments", configuration.SNYK_TEST_ARGUMENTS_DEFAULT)
+            "test-arguments",
+            config.get("test-arguments", configuration.SNYK_TEST_ARGUMENTS_DEFAULT),
         ),
     ]
     await module_utils.run_timeout(
@@ -362,7 +369,8 @@ async def _snyk_test(
         "test",
         "--json",
         *local_config.get(
-            "test-arguments", config.get("test-arguments", configuration.SNYK_TEST_ARGUMENTS_DEFAULT)
+            "test-arguments",
+            config.get("test-arguments", configuration.SNYK_TEST_ARGUMENTS_DEFAULT),
         ),
     ]
     test_json_str, _, message = await module_utils.run_timeout(
@@ -382,7 +390,9 @@ async def _snyk_test(
         _LOGGER.debug(message)
     else:
         _LOGGER.error(
-            "Snyk test JSON returned nothing on project %s branch %s", module_utils.get_cwd(), branch
+            "Snyk test JSON returned nothing on project %s branch %s",
+            module_utils.get_cwd(),
+            branch,
         )
 
     test_json = json.loads(test_json_str) if test_json_str else []
@@ -525,7 +535,8 @@ async def _snyk_fix(
             "snyk",
             "fix",
             *local_config.get(
-                "fix-arguments", config.get("fix-arguments", configuration.SNYK_FIX_ARGUMENTS_DEFAULT)
+                "fix-arguments",
+                config.get("fix-arguments", configuration.SNYK_FIX_ARGUMENTS_DEFAULT),
             ),
         ]
         fix_message, snyk_fix_success, message = await module_utils.run_timeout(
@@ -544,7 +555,12 @@ async def _snyk_fix(
             await module_utils.run_timeout(
                 command,
                 env_debug,
-                int(os.environ.get("GHCI_SNYK_FIX_TIMEOUT", os.environ.get("GHCI_SNYK_TIMEOUT", "300"))),
+                int(
+                    os.environ.get(
+                        "GHCI_SNYK_FIX_TIMEOUT",
+                        os.environ.get("GHCI_SNYK_TIMEOUT", "300"),
+                    )
+                ),
                 "Snyk fix (debug)",
                 "Error while fixing the project (debug)",
                 "Timeout while fixing the project (debug)",
@@ -633,7 +649,9 @@ def outdated_versions(
 
 
 def _get_sources(
-    dist: str, config: configuration.DpkgConfiguration, local_config: configuration.DpkgConfiguration
+    dist: str,
+    config: configuration.DpkgConfiguration,
+    local_config: configuration.DpkgConfiguration,
 ) -> apt_repo.APTSources:
     """
     Get the sources for the distribution.
@@ -676,7 +694,9 @@ def _get_sources(
 
 
 async def _get_packages_version(
-    package: str, config: configuration.DpkgConfiguration, local_config: configuration.DpkgConfiguration
+    package: str,
+    config: configuration.DpkgConfiguration,
+    local_config: configuration.DpkgConfiguration,
 ) -> str | None:
     """Get the version of the package."""
     global _GENERATION_TIME  # pylint: disable=global-statement
@@ -695,7 +715,8 @@ async def _get_packages_version(
 
 
 async def dpkg(
-    config: configuration.DpkgConfiguration, local_config: configuration.DpkgConfiguration
+    config: configuration.DpkgConfiguration,
+    local_config: configuration.DpkgConfiguration,
 ) -> None:
     """Update the version of packages in the file .github/dpkg-versions.yaml or ci/dpkg-versions.yaml."""
     if not os.path.exists("ci/dpkg-versions.yaml") and not os.path.exists(".github/dpkg-versions.yaml"):

github_app_geo_project/module/delete_old_workflow_runs/__init__.py

@@ -57,7 +57,9 @@ def get_github_application_permissions(self) -> module.GitHubApplicationPermissi
     async def process(
         self,
         context: module.ProcessContext[
-            configuration.DeleteOldWorkflowRunsConfiguration, dict[str, Any], dict[str, Any]
+            configuration.DeleteOldWorkflowRunsConfiguration,
+            dict[str, Any],
+            dict[str, Any],
         ],
     ) -> module.ProcessOutput[dict[str, Any], dict[str, Any]]:
         """