Skip to content

v3.0.0
Compare
Choose a tag to compare
@callahantiff callahantiff released this 08 Sep 20:00
· 151 commits to master since this release
v3.0.0
8061320

Release: v3.0.0

Website: https://github.com/callahantiff/PheKnowLator/wiki/v2.0.0
Data Access: Archived Builds
Docker Container: DockerHub Dedicated Project Container
PyPI: pkt-kg 3.0.0

Updated Jupyter Notebooks:

Updated Scripts:

  • pkt_kg/utils/kg_utils.py
  • builds/data_preprocessing.py
  • builds/deploy/triple-store/docker-compose.yml

Updates

  • The gets_ontology_class_dbxrefs() and gets_ontology_class_synonyms() functions were updated to account for classes and object properties that may have the same synonym and dbXref and/or multiple synonyms and dbXrefs. Originally, these functions were keyed by a synonym or dbXref string with class and object property URLs as values. This change maintains the same keys, but now includes a list of potential class and object property URLs for each key
  • Both notebooks and the builds/data_preprocessing.py script have been updated to reflect and account for this change
  • Updated the docker-compose.yml file to account for changes made in the DBCLS SPARQL proxy
Assets 2
Loading