Modify annotate ISFinder script

bvalot · Nov 29, 2019 · de73475 · de73475
1 parent 34473fa
commit de73475
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Showing 2 changed files with 3 additions and 1 deletion.
diff --git a/annotateISresult.py b/annotateISresult.py
@@ -84,7 +84,7 @@ def headerOut(header):
 
     ## load gffs informations
     gffs = gff.read_gff(args.gff, args.feature)
-    print(str(len(gffs)))
+    # print(str(len(gffs)))
 
     ## Verify  ISFinder input
     ## Sample Chromosome Start_Position Stop_Position Potential_sequence Potential_IS Alignment

diff --git a/lib/gff.py b/lib/gff.py
@@ -65,6 +65,8 @@ def read_gff(fi, feature):
             break
         if line[0] == "#":
             continue
+        if line == "":
+            continue
         pos = Pos(line.rstrip("\n").split("\t"))
         if pos.feature == feature:
             gffs.append(pos)