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Feature step5 integration #51

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merged 44 commits into from
Jan 29, 2024
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4a827a9
finished step5 integration
kmilo9999 Dec 28, 2023
86963a3
finshed step5 integration (forgot adding files to last commit)
kmilo9999 Dec 28, 2023
ee8dfae
chore: B04_angle.py -- organize imports, update file paths, add some …
cpaniaguam Jan 12, 2024
199e5ca
merge with main
kmilo9999 Jan 16, 2024
2dc33dd
fixing errors with dependencies
kmilo9999 Jan 16, 2024
54cecd8
something happened with this generalized_FT_.py file. It came back to…
kmilo9999 Jan 16, 2024
65cc3da
step5 not working here
kmilo9999 Jan 16, 2024
f48f904
updated make_spectra and generalize_FT to fix step2 and step5 integra…
kmilo9999 Jan 16, 2024
e78b79d
commented step5 test in the workflow
kmilo9999 Jan 16, 2024
b0a07f6
testing pipeline in phyton 311
kmilo9999 Jan 16, 2024
b2f03a8
trying to run the steps on macos
kmilo9999 Jan 17, 2024
94acbbf
trying to run the steps on macos- fix mpi installation
kmilo9999 Jan 17, 2024
53c9b9b
Apply suggestions from code review
kmilo9999 Jan 18, 2024
9f0ebf5
fix: typo
cpaniaguam Jan 18, 2024
5cfccc6
Merge pull request #68 from brown-ccv/fix-step2
kmilo9999 Jan 18, 2024
3c17664
uncommenting step5 in workflow
kmilo9999 Jan 16, 2024
1df4452
specifying depdencies versions in toml file
kmilo9999 Jan 20, 2024
23c1c62
rolling back to dependencies specific versions
kmilo9999 Jan 20, 2024
889c5d7
Update test-B01_SL_load_single_file.yml
kmilo9999 Jan 22, 2024
e218668
Update test-B01_SL_load_single_file.yml
kmilo9999 Jan 22, 2024
fdc1946
fix: use generic access in sliderule
cpaniaguam Jan 22, 2024
e80e308
Update sliderule client
kmilo9999 Jan 22, 2024
6b3c289
Merge pull request #75 from brown-ccv/34-remove-passwords-from-source…
mochell Jan 22, 2024
072eccb
specifying dependencies versions
kmilo9999 Jan 23, 2024
adca754
removed code, uncommenting workflows jobs
kmilo9999 Jan 20, 2024
539c25f
added h5py to depdency list
kmilo9999 Jan 24, 2024
78e56c6
Apply suggestions from code review
kmilo9999 Jan 24, 2024
2f5f22c
suggested changes in B04_angle.py
kmilo9999 Jan 25, 2024
08feb9c
Merge branch 'feat-step5-intg' of https://github.com/brown-ccv/icesat…
kmilo9999 Jan 25, 2024
f4d808e
add nan_polocy to omit nans in fitting model function
kmilo9999 Jan 25, 2024
fe6db3e
patch angle_optimizer to avoid CI crash on step5 test
kmilo9999 Jan 25, 2024
6fed1f1
something went wrong pushing this file in previous commit
kmilo9999 Jan 25, 2024
326e218
test patched file
kmilo9999 Jan 25, 2024
9d5a703
test just one step in the workflow
kmilo9999 Jan 25, 2024
a7f0067
test just one step in the workflow
kmilo9999 Jan 25, 2024
f1e737e
testing workflow again
kmilo9999 Jan 25, 2024
f52f46c
testing again with local change in optimize function
kmilo9999 Jan 25, 2024
a6cbfe2
patching the file before process starts
kmilo9999 Jan 25, 2024
400bec7
rollback to only modify angle optimizer
kmilo9999 Jan 25, 2024
4621289
removing patch file and add comment in the line that makes CI crash
kmilo9999 Jan 26, 2024
8f88fd6
removing deprecated import and moving constanat values out of loops
kmilo9999 Jan 26, 2024
7bff883
removing patch file
kmilo9999 Jan 26, 2024
9fc456a
Apply suggestions from code review
kmilo9999 Jan 26, 2024
ad61465
removing unsued variable from loop
kmilo9999 Jan 26, 2024
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10 changes: 7 additions & 3 deletions .github/workflows/test-B01_SL_load_single_file.yml
Original file line number Diff line number Diff line change
Expand Up @@ -8,8 +8,8 @@ jobs:
strategy:
fail-fast: false
matrix:
version: ['3.9']
runs-on: ubuntu-latest
version: ['3.11']
runs-on: ubuntu-22.04
steps:
- name: install mpi
run: sudo apt update && sudo apt-get install openmpi-bin openmpi-doc libopenmpi-dev
Expand All @@ -21,11 +21,15 @@ jobs:
cache: "pip"
- name: install icesat2-tracks using pip
run: pip install .
- name: List dependencies
run: pip list
- name: first step B01_SL_load_single_file
run: python src/icesat2_tracks/analysis_db/B01_SL_load_single_file.py 20190502052058_05180312_005_01 SH_testSLsinglefile2 True
- name: second step make_spectra
run: python src/icesat2_tracks/analysis_db/B02_make_spectra_gFT.py SH_20190502_05180312 SH_testSLsinglefile2 True
- name: third step plot_spectra
run: python src/icesat2_tracks/analysis_db/B03_plot_spectra_ov.py SH_20190502_05180312 SH_testSLsinglefile2 True
- name: fourth step plot_spectra
- name: fourth step IOWAGA thredds
run: python src/icesat2_tracks/analysis_db/A02c_IOWAGA_thredds_prior.py SH_20190502_05180312 SH_testSLsinglefile2 True
- name: Fifth step B04_angle
run: python src/icesat2_tracks/analysis_db/B04_angle.py SH_20190502_05180312 SH_testSLsinglefile2 True
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