testing again with local change in optimize function

.github/workflows/test-B01_SL_load_single_file.yml

@@ -31,11 +31,11 @@ jobs:
         run: python src/icesat2_tracks/analysis_db/B03_plot_spectra_ov.py SH_20190502_05180312 SH_testSLsinglefile2 True
       - name: fourth step IOWAGA thredds
         run: python src/icesat2_tracks/analysis_db/A02c_IOWAGA_thredds_prior.py SH_20190502_05180312 SH_testSLsinglefile2 True
-      - name: path minimize function to avoid crahs on CI
-        run: |
-          git apply angle_optimizer.patch -v
-      - name: print angle_optimzer pathed file
-        run: |
-            cat src/icesat2_tracks/ICEsat2_SI_tools/angle_optimizer.py
+      # - name: path minimize function to avoid crahs on CI
+      #   run: |
+      #     git apply angle_optimizer.patch -v
+      # - name: print angle_optimzer pathed file
+      #   run: |
+      #       cat src/icesat2_tracks/ICEsat2_SI_tools/angle_optimizer.py
       - name: Fifth step B04_angle
         run: python src/icesat2_tracks/analysis_db/B04_angle.py SH_20190502_05180312 SH_testSLsinglefile2 True

src/icesat2_tracks/ICEsat2_SI_tools/angle_optimizer.py

@@ -208,7 +208,7 @@ def sample(self, fitting_args= None , method='emcee', steps=100, verbose= True,
         fitting_args, fitting_kargs  = self.fitting_args, self.fitting_kargs
         self.fitter = self.LM.minimize(self.objective_func, self.params,  method=method,
                         args=fitting_args, kws=fitting_kargs ,
-                        nwalkers=self.nwalkers, steps=steps, pos= self.seeds, **kargs)
+                        nwalkers=self.nwalkers, steps=steps, pos= self.seeds,nan_policy='omit' , **kargs)
         if verbose:
             print(self.LM.report_fit(self.fitter))
             print('results at self.fitter')