CLI Tools, CLI for Steps 1-7 #149
Workflow file for this run
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| name: Test Steps | |
| on: | |
| pull_request: {} | |
| push: | |
| branches: [ main ] | |
| jobs: | |
| python_run_scripts: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| version: ['3.11'] | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: install mpi | |
| run: sudo apt update && sudo apt-get install openmpi-bin openmpi-doc libopenmpi-dev | |
| - uses: actions/checkout@v3 | |
| - name: setup python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.version }} # install the python version needed | |
| cache: "pip" | |
| - name: install icesat2-tracks using pip | |
| run: pip install . | |
| - name: List dependencies | |
| run: pip list | |
| - name: test icesat2waves app | |
| run: icesat2waves --help | |
| - name: test command for step 1 | |
| run: load_single_file --help | |
| - name: first step B01_SL_load_single_file | |
| run: python src/icesat2_tracks/analysis_db/B01_SL_load_single_file.py --track-name 20190502052058_05180312_005_01 --batch-key SH_testSLsinglefile2 --output-dir ./work | |
| - name: second step make_spectra | |
| run: python src/icesat2_tracks/analysis_db/B02_make_spectra_gFT.py SH_20190502_05180312 SH_testSLsinglefile2 True | |
| - name: third step plot_spectra | |
| run: python src/icesat2_tracks/analysis_db/B03_plot_spectra_ov.py SH_20190502_05180312 SH_testSLsinglefile2 True | |
| - name: fourth step IOWAGA thredds | |
| run: python src/icesat2_tracks/analysis_db/A02c_IOWAGA_thredds_prior.py SH_20190502_05180312 SH_testSLsinglefile2 True | |
| - name: Fifth step B04_angle | |
| run: python src/icesat2_tracks/analysis_db/B04_angle.py SH_20190502_05180312 SH_testSLsinglefile2 True | |
| - name: Sixth step B05_define_angle | |
| run: python src/icesat2_tracks/analysis_db/B05_define_angle.py SH_20190502_05180312 SH_testSLsinglefile2 True | |
| - name: Seventh step B06_correct_separate_var | |
| run: python src/icesat2_tracks/analysis_db/B06_correct_separate_var.py SH_20190502_05180312 SH_testSLsinglefile2 True |