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Feat append arglist to srun#8

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fordmcdonald wants to merge 26 commits intomainbrown-bnc/oscar-scripts:mainfrom feat-append-arglist-to-srunbrown-bnc/oscar-scripts:feat-append-arglist-to-srunCopy head branch name to clipboard

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Commits on Mar 6, 2023

• feat(run_xnat2bids.py): add cli arg to parse user config and merger with default config

  

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Commits on Mar 7, 2023

• feat: append xnat2bids parameters to arglist

  

  Ford McDonald

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Commits on Mar 8, 2023

• resolve change requests and add unit test

  

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• point default config to scripts directory

  

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  f94ed6c

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• updates singularity path binding and adds logging

  

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• generic user mail for tests

  

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Commits on Mar 21, 2023

• fix: resolve change requests

  

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Commits on Mar 27, 2023

• handle multiple sessions and verbose flag

  

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Commits on Mar 28, 2023

• add asyncio to launch all jobs concurrently

  

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• adding example config for processing multiple sessions

  

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• turn off asyncio debug logging

  

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Commits on Mar 29, 2023

• srun in quiet mode, removed await for child process to complete

  

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• add session number to output log filenames

  

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Commits on Apr 3, 2023

• add structured logging enabled by xnat2bids verbosity and other tuning

  

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• remove dead code

  

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• Update run_xnat2bids.py

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• Update run_xnat2bids.py

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• logging comments

  

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• Update x2b_default_config.toml

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• Update x2b_example_user_config.toml

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• Update x2b_default_config.toml

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Commits on Apr 6, 2023

• update unit tests with bug fixes

  

  Ford McDonald

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• define bids_root if provided in config

  

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• handle user specified version

  

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Commits on Apr 11, 2023

• Merge branch 'feat-append-arglist-to-srun' into feat-batch-multiple-sessions

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• Merge pull request #11 from brown-bnc/feat-batch-multiple-sessions

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