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@tomkinsc tomkinsc released this 30 Jun 15:36
· 1217 commits to master since this release

New:

  • added common_barcodes command to illumina.py to write a report of the barcodes present in a run, sorted in descending order by count
  • added --commonBarcodes to illumina_demux command to write a common barcodes file as part of the demultiplexing process

Fixes:

  • more robust handling of sample sheet data
  • Snakemake pipeline fixes related to how Snakemake handles parameters in newer versions
  • update trimmomatic to 0.36
  • trimmomatic install fix
  • various fixes in interhost.rules (Snakemake pipeline)