v1.6.0
New:
- added
common_barcodes
command toillumina.py
to write a report of the barcodes present in a run, sorted in descending order by count - added
--commonBarcodes
toillumina_demux
command to write a common barcodes file as part of the demultiplexing process
Fixes:
- more robust handling of sample sheet data
- Snakemake pipeline fixes related to how Snakemake handles parameters in newer versions
- update trimmomatic to 0.36
- trimmomatic install fix
- various fixes in interhost.rules (Snakemake pipeline)