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v1.17.2
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@tomkinsc tomkinsc released this 25 Jul 15:37
· 659 commits to master since this release
v1.17.2
0ee710f

Changed:

  • Improved HiSeq X / HiSeq 4000 compatibility: broken symlinks are now removed from Illumina lane directories if present. This is helpful for HiSeq-X/4000 systems, which write out a single s.locs file for cluster locations rather than per-tile location files. Picard's CheckIlluminaDirectory can create symlinks that take the place of per-tile *.locs files, however these links can break when runs are moved between systems. The change in this release of viral-ngs allows broken links to be removed and corrected.
  • CheckIlluminaDirectory is now called on each call to illumina_demux to check run directories for validity prior to demultiplexing
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