v1.17.0
New:
- The functions to plot coverage in
reports.py
can now limit graph bounds via--plotXLimits
and--plotYLimits
- A function
lane_metrics
now exists inillumina.py
to output cluster density for a run
Fixed:
- Exception now avoided when two sequences do not overlap during multiple alignment/annotation transfer
- Increase picard jvm memory for metagenomics deduplication
- In snakemake metagenomics pipeline, fix the nodupes report incorrectly being dupes