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v1.14.0
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@tomkinsc tomkinsc released this 19 Jan 16:25
· 759 commits to master since this release
v1.14.0
30621c2

New:

  • read_utils.align_and_fix() now has an option--skipMarkDupes since samtools depth can segfault if if duplicate reads are marked
  • reports.align_and_plot_coverage() can now use Novoalign as the aligner rather the default BWA mem

Fixed:

  • align_rna memory raised to 36 GB in Snakemake pipeline
  • metagenomics.coverage_lca() is now hardened to missing taxids

Changed/Updated:

  • For align_rna, "sensitive" option is now disabled by default for BWA mem
  • pytest 2.9.1 -> 3.0.5
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