Merge pull request #348 from broadinstitute/ct-parallel-lastal

add lastal -P0 option for multithreading
broadinstitute · Jun 16, 2016 · d472395 · d472395
2 parents a46f204 + 5be1d3b
commit d472395
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/taxon_filter.py b/taxon_filter.py
@@ -193,7 +193,7 @@ def lastal_chunked_fastq(
 
             lastal_out = mkstempfname('.lastal')
             with open(lastal_out, 'wt') as outf:
-                cmd = [lastal_path, '-Q1']
+                cmd = [lastal_path, '-Q1', '-P0']
                 cmd.extend(
                     [
                         '-n', max_gapless_alignments_per_position, '-l', min_length_for_initial_matches, '-L',