finished edits for next release

broadinstitute · Jan 2, 2020 · 7649f75 · 7649f75
1 parent 771a68c
commit 7649f75
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Showing 5 changed files with 26 additions and 15 deletions.
diff --git a/grails-app/conf/Config.groovy b/grails-app/conf/Config.groovy
@@ -601,7 +601,7 @@ portal.type.override = "t2d"     // options are "t2d", "stroke", "mi", "ibd", "e
 
 portal.data.versionDesignator = [ new PortalVersionBean("t2d",      // label for this portal type
                                                         "T2D",  // displayable label for this portal type
-                                                        "mdv41",    // the MDV number for this portal
+                                                        "mdv42",    // the MDV number for this portal
                                                         "T2DKP", // name of KB data we want
                                                         "T2D",      // the default phenotype for this portal
                                                         "ExSeq_19k_mdv28",  // default data set.  Used rarely.
@@ -660,7 +660,7 @@ portal.data.versionDesignator = [ new PortalVersionBean("t2d",      // label for
                                             ),
                                   new PortalVersionBean("stroke",
                                                           "Stroke",
-                                                          "mdv75",
+                                                          "mdv76",
                                           "CDKP", // name of KB data we want
                                                           "Stroke_all",
                                                           "GWAS_Stroke_mdv70",
@@ -714,7 +714,7 @@ portal.data.versionDesignator = [ new PortalVersionBean("t2d",      // label for
                                   ),
                                   new PortalVersionBean("mi",
                                                           "Myocardial Infarction",
-                                                          "mdv96",
+                                                          "mdv97",
                                           "CVDKP", // name of KB data we want
                                                           "MI",
                                                           "GWAS_CARDIoGRAM_mdv91",

diff --git a/grails-app/i18n/informational.properties b/grails-app/i18n/informational.properties
@@ -1478,6 +1478,7 @@ informational.contact.MI-2=A complete list of Knowledge Portal project staff may
 informational.contact.MI.consortia=Contact the consortia that generated the data in the CVDKP:<ul><li>\
   <a href="https://www.afgen.org/contact" target="_blank">AFGen</a></li>\
   <li><a href="http://lipidgenetics.org/" target="_blank">GLGC</a></li>\
+  <li><a href="https://www.hermesconsortium.org/" target="_blank">Heart Failure Molecular Epidemiology for Therapeutic Targets consortium (HERMES)</a></li>\
   <li><a href="http://www.kathiresanlab.org/contact-us/" target="_blank">MIGen</a></li>\
   <li><a href="http://www.cardiogramplusc4d.org/steering-committee/" target="_blank">CARDIoGRAMplusC4D</a></li></ul>
 informational.contact.sleep.consortia=Contact the consortia that generated the data in the SDKP:<ul><li>\
@@ -1490,6 +1491,8 @@ informational.about_MI.section2=The <a href="https://www.afgen.org/" target="_bl
   and a full list of AFGen investigators is available <a href="https://www.afgen.org/members-c1zr5" target="_blank">here</a>.
 informational.about_MI.section3=The <a href="http://lipidgenetics.org/" target="_blank">Global Lipids Genetics Consortium (GLGC)</a> \
   studies the genetics of plasma lipids.  The current collaborative research network involves over 200 investigators from more than 80 institutions.
+informational.about_MI.section3a=The <a href="https://www.hermesconsortium.org/" target="_blank">Heart Failure Molecular Epidemiology for Therapeutic Targets (HERMES)</a> \
+  consortium is an international collaboration that aims to generate insights into the causal pathways leading to heart failure to inform new therapeutic approaches.
 informational.about_MI.section4=The <a href="http://www.kathiresanlab.org/collaborators/myocardial-infarction-genetics-exome-sequencing-consortium/" target="_blank">Myocardial \
   Infarction Genetics Consortium (MIGen)</a> performs both genotyping and sequencing studies to understand the genetics of early-onset heart attack.
 informational.about_MI.section4a=The <a href="http://www.cardiogramplusc4d.org/" target="_blank">CARDIoGRAMplusC4D Consortium</a> is a collaborative effort to combine \

diff --git a/grails-app/i18n/portalHome.properties b/grails-app/i18n/portalHome.properties
@@ -117,7 +117,8 @@ about.the.mi.portal.text=The Cardiovascular Disease Knowledge Portal (CVDKP) fra
   team of scientists and software engineers at the <a href="https://www.broadinstitute.org/" target="_blank">Broad \
   Institute of MIT and Harvard</a>. Data in the CVDKP were generated by the \
   <a href="https://www.afgen.org/" target="_blank">Atrial Fibrillation Consortium (AFGen)</a>, the <a href="http://lipidgenetics.org/" target="_blank">Global \
-  Lipids Genetics Consortium (GLGC)</a>, the <a href="http://www.kathiresanlab.org/collaborators/myocardial-infarction-genetics-exome-sequencing-consortium/" target="_blank">Myocardial \
+  Lipids Genetics Consortium (GLGC)</a>, the <a href="https://www.hermesconsortium.org/" target="_blank">Heart Failure Molecular Epidemiology for Therapeutic Targets consortium (HERMES)</a>, \
+  the <a href="http://www.kathiresanlab.org/collaborators/myocardial-infarction-genetics-exome-sequencing-consortium/" target="_blank">Myocardial \
   Infarction Genetics Consortium (MIGen)</a>, and the <a href="http://www.cardiogramplusc4d.org" target="_blank">CARDIoGRAMPlusC4D Consortium</a>.<br><p>We welcome contributions of data and the involvement of interested \
   researchers in collaborations on analyses, methods, or tool development. Please <a href="mailto:[email protected]">contact us</a> for more information.</p>
 about.the.ibd.portal.text=Details about the V2F Portal project

diff --git a/grails-app/views/home/portalHome.gsp b/grails-app/views/home/portalHome.gsp
@@ -338,26 +338,24 @@
                 mpgSoftware.homePage.newFeatures([{"name":"New Resource","link":"javascript:;","class":"resource","type":"new"},{"name":"Update Module","link":"javascript:;","class":"module","type":"updated"},{"name":"New Feature","link":"javascript:;","class":"feature","type":"new"}]);
              */
                 mpgSoftware.homePage.newFeatures([
-                    {"name":"Tutorial video: Custom aggregation tests","link":"https://www.youtube.com/watch?v=O78rN5A7SAw&list=PLlMMtlgw6qNj6ICrkMu2BAPhs-6XFBpTr&index=7&t=0s","class":"resource","type":"new"},
-                    {"name":"Webinar video: Diabetes Epigenome Atlas","link":"https://www.youtube.com/watch?v=zMHFSMkYNLk&feature=youtu.be","class":"resource","type":"new"}]);
+                    {"name":"Tutorial video: Diabetes Epigenome Atlas","link":"https://youtu.be/vZdMfjSvVQk","class":"resource","type":"new"},
+                    {"name":"Webinar video: LocusZoom","link":"https://www.youtube.com/watch?v=AmU7IIAeZJ4&feature=youtu.be","class":"resource","type":"new"}]);
             </script>
         </g:if>
         <g:elseif test="${g.portalTypeString()?.equals('mi')}">
             <script type="text/javascript">
                 /* Example to add 'new' or 'updated' feature buttons;
                  mpgSoftware.homePage.newFeatures([{"name":"New Resource","link":"javascript:;","class":"resource","type":"new"},{"name":"Update Module","link":"javascript:;","class":"module","type":"updated"},{"name":"New Feature","link":"javascript:;","class":"feature","type":"new"}]);
                  */
-                %{--mpgSoftware.homePage.newFeatures([{"name":"Tissue enrichments","link":"${createLink(controller:'trait',action:'tissueTable')}","class":"resource","type":"new"},--}%
-                    %{--{"name":"Webinar video: gene-specific resources in the Portals","link":"https://www.youtube.com/watch?v=ylPn6D1hpY4","class":"resource","type":"new"}]);--}%
+                mpgSoftware.homePage.newFeatures([{"name":"Webinar video: LocusZoom","link":"https://www.youtube.com/watch?v=AmU7IIAeZJ4&feature=youtu.be","class":"resource","type":"new"}]);
             </script>
         </g:elseif>
         <g:elseif test="${g.portalTypeString()?.equals('stroke')}">
             <script type="text/javascript">
                 /* Example to add 'new' or 'updated' feature buttons;
                  mpgSoftware.homePage.newFeatures([{"name":"New Resource","link":"javascript:;","class":"resource","type":"new"},{"name":"Update Module","link":"javascript:;","class":"module","type":"updated"},{"name":"New Feature","link":"javascript:;","class":"feature","type":"new"}]);
                  */
-                %{--mpgSoftware.homePage.newFeatures([{"name":"Tissue enrichments","link":"${createLink(controller:'trait',action:'tissueTable')}","class":"feature","type":"new"},--}%
-                    %{--{"name":"Webinar video: gene-specific resources in the Portals","link":"https://www.youtube.com/watch?v=ylPn6D1hpY4","class":"resource","type":"new"}]);--}%
+                mpgSoftware.homePage.newFeatures([{"name":"Webinar video: LocusZoom","link":"https://www.youtube.com/watch?v=AmU7IIAeZJ4&feature=youtu.be","class":"resource","type":"new"}]);
             </script>
         </g:elseif>
 
@@ -366,11 +364,19 @@
                 /* Example to add 'new' or 'updated' feature buttons;
                  mpgSoftware.homePage.newFeatures([{"name":"New Resource","link":"javascript:;","class":"resource","type":"new"},{"name":"Update Module","link":"javascript:;","class":"module","type":"updated"},{"name":"New Feature","link":"javascript:;","class":"feature","type":"new"}]);
                  */
-                %{--mpgSoftware.homePage.newFeatures([{"name":"Tissue enrichments","link":"${createLink(controller:'trait',action:'tissueTable')}","class":"feature","type":"new"},--}%
-                    %{--{"name":"Webinar video: gene-specific resources in the Portals","link":"https://www.youtube.com/watch?v=ylPn6D1hpY4","class":"resource","type":"new"}]);--}%
+                mpgSoftware.homePage.newFeatures([{"name":"Webinar video: LocusZoom","link":"https://www.youtube.com/watch?v=AmU7IIAeZJ4&feature=youtu.be","class":"resource","type":"new"}]);
             </script>
         </g:elseif>
 
+        <g:elseif test="${g.portalTypeString()?.equals('bone')}"> 
+            <script type="text/javascript"> 
+                /* Example to add 'new' or 'updated' feature buttons; 
+                mpgSoftware.homePage.newFeatures([{"name":"New Resource","link":"javascript:;","class":"resource","type":"new"},{"name":"Update Module","link":"javascript:;","class":"module","type":"updated"},{"name":"New Feature","link":"javascript:;","class":"feature","type":"new"}]); 
+                */ 
+                mpgSoftware.homePage.newFeatures([{"name":"Webinar video: LocusZoom","link":"https://www.youtube.com/watch?v=AmU7IIAeZJ4&feature=youtu.be","class":"resource","type":"new"}]); 
+            </script>
+             </g:elseif>
+
     <!-- New features buttons end -->
     </div>
 </div>
@@ -386,7 +392,7 @@
                         <div class="col-md-12" style="padding-top:40px; font-size: 20px;">
                         <h2 style="font-family:'Oswald'; font-size: 40px;font-weight:700"><g:message code="portal.aboutTheData" default="About the data" /></h2>
                         <p><span  style="font-size: 20px;"><g:message code="portal.stroke.about.the.data.text" /></span>
-                        <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">37 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">69 traits</span></h1>
+                        <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">27 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">60 traits</span></h1>
                         <hr />
 
 
@@ -407,7 +413,7 @@
                             <img src="${resource(dir: 'images', file: 'data_icon4.png')}" style="width: 200px; margin-right: -50px;" align="right" >
                         <h2 style="font-family:'Oswald'; font-size: 40px;font-weight:700; margin-top:5px;"><g:message code="portal.aboutTheData" default="About the data" /></h2>
                         <p><g:message code="portal.mi.about.the.data.text" />
-                        <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">28 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">52 traits</span></h1>
+                        <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">29 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">52 traits</span></h1>
 
                         <hr/> <a href="http://institute.heart.org" target="_blank"><img src="${resource(dir: 'images/organizations', file: 'AHA_precision.jpg')}" style="width: 330px; margin-right: 10px;" align="right" ></a>
 
@@ -432,7 +438,7 @@
                         <img src="${resource(dir: 'images', file: 'data_icon4.png')}" style="width: 200px; margin-right: -50px;" align="right" >
                         <h2 style="font-family:'Oswald'; font-size: 40px;font-weight:700; margin-top:5px;"><g:message code="portal.aboutTheData" default="About the data" /></h2>
                     <p><g:message code="portal.sleep.about.the.data.text" />
-                    <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">24 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">65 traits</span></h1>
+                    <h1 style="display:block; font-size:65px; letter-spacing:-0.03em; width:550px; margin-top: 0px;"><span style="color:#F58A1F;font-family: 'Oswald'; ">25 datasets,</span> <span style="color:#80C242;font-family: 'Oswald'; ">73 traits</span></h1>
 
                 </g:elseif>
                     <g:elseif test="${g.portalTypeString()?.equals('lung')}">

diff --git a/grails-app/views/informational/_about_mi.gsp b/grails-app/views/informational/_about_mi.gsp
@@ -84,6 +84,7 @@
                 <p><g:message code="informational.about_MI.section1"/></p>
                 <p><g:message code="informational.about_MI.section2"/></p>
                 <p><g:message code="informational.about_MI.section3"/></p>
+                <p><g:message code="informational.about_MI.section3a"/></p>
                 <p><g:message code="informational.about_MI.section4"/></p>
                 <p><g:message code="informational.about_MI.section4a"/></p>
                 <h3 class="dk-blue-bordered"><g:message code="informational.about_KP.header"/></h3>