Updated project name in pyproject.toml #329
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Integration Tests | |
| # Controls when the action will run. | |
| # Triggers the workflow on push or pull request events | |
| on: [push, workflow_dispatch] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| matrix: | |
| python: [ '3.7', '3.8', '3.9', '3.10' ] | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - uses: actions/checkout@v2 | |
| # Setup Python allows the tox test to run on py version specified in git matrix. | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python }} | |
| - name: Install Dev Requirements | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r dev-requirements.txt | |
| - name: Pull and setup mysql dockers | |
| # Parameters set in the command below must be reused in the cromwell | |
| # config file: tests/resources/cromwell_application.conf | |
| run: | | |
| docker run \ | |
| -p 3306:3306 \ | |
| --ip=172.17.0.2 \ | |
| --name NameOfTheContainer \ | |
| -e MYSQL_ROOT_PASSWORD=YourPassword \ | |
| -e MYSQL_DATABASE=DatabaseName \ | |
| -e MYSQL_USER=ChooseAName \ | |
| -e MYSQL_PASSWORD=YourOtherPassword \ | |
| -d \ | |
| mysql/mysql-server:5.5 | |
| - name: Pull and setup cromwell docker | |
| run: | | |
| export CROMWELL_TAG=$(curl -s https://api.github.com/repos/broadinstitute/cromwell/releases/latest | \ | |
| grep -o '"tag_name": "[^"]*' | \ | |
| grep -o '[^"]*$' | \ | |
| grep -Eo "^[0-9]+") | |
| docker run \ | |
| -p 8000:8000 \ | |
| -v ${PWD}/tests/resources/cromwell_application.conf:/cromwell_application.conf \ | |
| --name CromwellContainer \ | |
| -e JAVA_OPTS="-Dconfig.file=/cromwell_application.conf" \ | |
| -d broadinstitute/cromwell:${CROMWELL_TAG} server | |
| # Give cromwell server time to setup | |
| sleep 1m | |
| - name: Install Tox | |
| run: pip install tox | |
| - name: Run Tox integration tests | |
| # Run tox using the version of Python in `PATH` | |
| run: tox -e integration |