Merge pull request #39 from bridge2ai/issue-38-has-training-resource

Issue 38 has training resource
bridge2ai · Nov 18, 2024 · a953d18 · a953d18
2 parents 1b4d68e + 8a45c85
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diff --git a/docs/AnatomicalEntity.md b/docs/AnatomicalEntity.md
@@ -1,17 +1,27 @@
+
+
 # Class: AnatomicalEntity
+
+
 _A subcellular location, cell type or gross anatomical part_
 
 
 
 
+
 URI: [https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity](https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity)
 
 
 
+
+
+
 ```mermaid
  classDiagram
     class AnatomicalEntity
+    click AnatomicalEntity href "../AnatomicalEntity"
       NamedThing <|-- AnatomicalEntity
+        click NamedThing href "../NamedThing"
       
       AnatomicalEntity : category
         
@@ -31,11 +41,21 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity](https:/
         
       AnatomicalEntity : related_to
         
-          AnatomicalEntity ..> NamedThing : related_to
+          
+    
+    
+    AnatomicalEntity --> "*" NamedThing : related_to
+    click NamedThing href "../NamedThing"
+
         
       AnatomicalEntity : subclass_of
         
-          AnatomicalEntity ..> NamedThing : subclass_of
+          
+    
+    
+    AnatomicalEntity --> "*" NamedThing : subclass_of
+    click NamedThing href "../NamedThing"
+
         
       
 ```
@@ -54,12 +74,12 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:AnatomicalEntity](https:/
 
 | Name | Cardinality and Range | Description | Inheritance |
 | ---  | --- | --- | --- |
-| [id](id.md) | 1..1 <br/> [Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) |
+| [id](id.md) | 1 <br/> [Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) |
 | [category](category.md) | 0..1 <br/> [CategoryType](CategoryType.md) | Name of the high level ontology class in which this entity is categorized | [NamedThing](NamedThing.md) |
 | [name](name.md) | 0..1 <br/> [String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) |
 | [description](description.md) | 0..1 <br/> [String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) |
-| [subclass_of](subclass_of.md) | 0..* <br/> [NamedThing](NamedThing.md) | Holds between two classes where the domain class is a specialization of the r... | [NamedThing](NamedThing.md) |
-| [related_to](related_to.md) | 0..* <br/> [NamedThing](NamedThing.md) | A relationship that is asserted between two named things | [NamedThing](NamedThing.md) |
+| [subclass_of](subclass_of.md) | * <br/> [NamedThing](NamedThing.md) | Holds between two classes where the domain class is a specialization of the r... | [NamedThing](NamedThing.md) |
+| [related_to](related_to.md) | * <br/> [NamedThing](NamedThing.md) | A relationship that is asserted between two named things | [NamedThing](NamedThing.md) |
 | [contributor_name](contributor_name.md) | 0..1 <br/> [String](String.md) | The name of the person who added this node | [NamedThing](NamedThing.md) |
 | [contributor_github_name](contributor_github_name.md) | 0..1 <br/> [String](String.md) | The name of the github user who added this node | [NamedThing](NamedThing.md) |
 | [contributor_orcid](contributor_orcid.md) | 0..1 <br/> [Uriorcurie](Uriorcurie.md) | The ORCiD of the person who added this node | [NamedThing](NamedThing.md) |
@@ -104,7 +124,6 @@ Instances of this class *should* have identifiers with one of the following pref
 
 
 
-
 ## Mappings
 
 | Mapping Type | Mapped Value |
@@ -118,6 +137,8 @@ Instances of this class *should* have identifiers with one of the following pref
 
 
 
+
+
 ## LinkML Source
 
 <!-- TODO: investigate https://stackoverflow.com/questions/37606292/how-to-create-tabbed-code-blocks-in-mkdocs-or-sphinx -->
@@ -136,7 +157,6 @@ exact_mappings:
 - wikidata:Q4936952
 narrow_mappings:
 - ncit:C12219
-rank: 1000
 is_a: NamedThing
 
 ```
@@ -156,7 +176,6 @@ exact_mappings:
 - wikidata:Q4936952
 narrow_mappings:
 - ncit:C12219
-rank: 1000
 is_a: NamedThing
 attributes:
   id:
@@ -221,20 +240,19 @@ attributes:
     rank: 1000
     is_a: related_to
     domain: NamedThing
-    multivalued: true
     inherited: true
     alias: subclass_of
     owner: AnatomicalEntity
     domain_of:
     - NamedThing
     range: NamedThing
+    multivalued: true
   related_to:
     name: related_to
     description: A relationship that is asserted between two named things.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     domain: NamedThing
-    multivalued: true
     inherited: true
     alias: related_to
     owner: AnatomicalEntity
@@ -243,6 +261,7 @@ attributes:
     - Organization
     symmetric: true
     range: NamedThing
+    multivalued: true
   contributor_name:
     name: contributor_name
     description: The name of the person who added this node.

diff --git a/docs/BiomedicalStandard.md b/docs/BiomedicalStandard.md
@@ -1,27 +1,47 @@
+
+
 # Class: BiomedicalStandard
+
+
 _Represents a standard in the Bridge2AI Standards Registry with particular applications or relevance to clinical or biomedical research purposes._
 
 
 
 
+
 URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard)
 
 
 
+
+
+
 ```mermaid
  classDiagram
     class BiomedicalStandard
+    click BiomedicalStandard href "../BiomedicalStandard"
       DataStandard <|-- BiomedicalStandard
+        click DataStandard href "../DataStandard"
       
       BiomedicalStandard : category
         
       BiomedicalStandard : collection
         
-          BiomedicalStandard ..> StandardsCollectionTag : collection
+          
+    
+    
+    BiomedicalStandard --> "*" StandardsCollectionTag : collection
+    click StandardsCollectionTag href "../StandardsCollectionTag"
+
         
       BiomedicalStandard : concerns_data_topic
         
-          BiomedicalStandard ..> DataTopic : concerns_data_topic
+          
+    
+    
+    BiomedicalStandard --> "*" DataTopic : concerns_data_topic
+    click DataTopic href "../DataTopic"
+
         
       BiomedicalStandard : contribution_date
         
@@ -37,7 +57,21 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https
         
       BiomedicalStandard : has_relevant_organization
         
-          BiomedicalStandard ..> Organization : has_relevant_organization
+          
+    
+    
+    BiomedicalStandard --> "*" Organization : has_relevant_organization
+    click Organization href "../Organization"
+
+        
+      BiomedicalStandard : has_training_resource
+        
+          
+    
+    
+    BiomedicalStandard --> "*" DataStandardOrTool : has_training_resource
+    click DataStandardOrTool href "../DataStandardOrTool"
+
         
       BiomedicalStandard : id
         
@@ -53,13 +87,23 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https
         
       BiomedicalStandard : related_to
         
-          BiomedicalStandard ..> NamedThing : related_to
+          
+    
+    
+    BiomedicalStandard --> "*" NamedThing : related_to
+    click NamedThing href "../NamedThing"
+
         
       BiomedicalStandard : requires_registration
         
       BiomedicalStandard : subclass_of
         
-          BiomedicalStandard ..> NamedThing : subclass_of
+          
+    
+    
+    BiomedicalStandard --> "*" NamedThing : subclass_of
+    click NamedThing href "../NamedThing"
+
         
       BiomedicalStandard : url
         
@@ -82,22 +126,23 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https
 
 | Name | Cardinality and Range | Description | Inheritance |
 | ---  | --- | --- | --- |
-| [collection](collection.md) | 0..* <br/> [StandardsCollectionTag](StandardsCollectionTag.md) | Tags for specific sets of standards | [DataStandardOrTool](DataStandardOrTool.md) |
-| [concerns_data_topic](concerns_data_topic.md) | 0..* <br/> [DataTopic](DataTopic.md) | Subject standard is generally applied in the context of object data topic | [DataStandardOrTool](DataStandardOrTool.md) |
-| [has_relevant_organization](has_relevant_organization.md) | 0..* <br/> [Organization](Organization.md) | Subject standard is managed or otherwise guided buy the object organization(s... | [DataStandardOrTool](DataStandardOrTool.md) |
+| [collection](collection.md) | * <br/> [StandardsCollectionTag](StandardsCollectionTag.md) | Tags for specific sets of standards | [DataStandardOrTool](DataStandardOrTool.md) |
+| [concerns_data_topic](concerns_data_topic.md) | * <br/> [DataTopic](DataTopic.md) | Subject standard is generally applied in the context of object data topic | [DataStandardOrTool](DataStandardOrTool.md) |
+| [has_relevant_organization](has_relevant_organization.md) | * <br/> [Organization](Organization.md) | Subject standard is managed or otherwise guided buy the object organization(s... | [DataStandardOrTool](DataStandardOrTool.md) |
+| [has_training_resource](has_training_resource.md) | * <br/> [DataStandardOrTool](DataStandardOrTool.md) | Relevant training resources, standard usage manuals, or other documentation f... | [DataStandardOrTool](DataStandardOrTool.md) |
 | [purpose_detail](purpose_detail.md) | 0..1 <br/> [String](String.md) | Text description of the standard or tool | [DataStandardOrTool](DataStandardOrTool.md) |
 | [is_open](is_open.md) | 0..1 <br/> [Boolean](Boolean.md) | Is the standard or tool FAIR and available free of cost? | [DataStandardOrTool](DataStandardOrTool.md) |
-| [requires_registration](requires_registration.md) | 0..1 <br/> [Boolean](Boolean.md) | Does usage of the standard or tool require registrion of a user or group with... | [DataStandardOrTool](DataStandardOrTool.md) |
+| [requires_registration](requires_registration.md) | 0..1 <br/> [Boolean](Boolean.md) | Does usage of the standard or tool require registration of a user or group wi... | [DataStandardOrTool](DataStandardOrTool.md) |
 | [url](url.md) | 0..1 <br/> [Uriorcurie](Uriorcurie.md) | URL for basic documentation of the standard or tool | [DataStandardOrTool](DataStandardOrTool.md) |
 | [publication](publication.md) | 0..1 <br/> [Uriorcurie](Uriorcurie.md) | Relevant publication for the standard or tool | [DataStandardOrTool](DataStandardOrTool.md) |
 | [formal_specification](formal_specification.md) | 0..1 <br/> [Uriorcurie](Uriorcurie.md) | Relevant code repository or other location for a formal specification of the ... | [DataStandardOrTool](DataStandardOrTool.md) |
 | [not_relevant_to_dgps](not_relevant_to_dgps.md) | 0..1 <br/> [Boolean](Boolean.md) | Is the standard or tool currently relevant to DGPs? | [DataStandardOrTool](DataStandardOrTool.md) |
-| [id](id.md) | 1..1 <br/> [Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) |
+| [id](id.md) | 1 <br/> [Uriorcurie](Uriorcurie.md) | A unique identifier for a thing | [NamedThing](NamedThing.md) |
 | [category](category.md) | 0..1 <br/> [CategoryType](CategoryType.md) | Name of the high level ontology class in which this entity is categorized | [NamedThing](NamedThing.md) |
 | [name](name.md) | 0..1 <br/> [String](String.md) | A human-readable name for a thing | [NamedThing](NamedThing.md) |
 | [description](description.md) | 0..1 <br/> [String](String.md) | A human-readable description for a thing | [NamedThing](NamedThing.md) |
-| [subclass_of](subclass_of.md) | 0..* <br/> [NamedThing](NamedThing.md) | Holds between two classes where the domain class is a specialization of the r... | [NamedThing](NamedThing.md) |
-| [related_to](related_to.md) | 0..* <br/> [NamedThing](NamedThing.md) | A relationship that is asserted between two named things | [NamedThing](NamedThing.md) |
+| [subclass_of](subclass_of.md) | * <br/> [NamedThing](NamedThing.md) | Holds between two classes where the domain class is a specialization of the r... | [NamedThing](NamedThing.md) |
+| [related_to](related_to.md) | * <br/> [NamedThing](NamedThing.md) | A relationship that is asserted between two named things | [NamedThing](NamedThing.md) |
 | [contributor_name](contributor_name.md) | 0..1 <br/> [String](String.md) | The name of the person who added this node | [NamedThing](NamedThing.md) |
 | [contributor_github_name](contributor_github_name.md) | 0..1 <br/> [String](String.md) | The name of the github user who added this node | [NamedThing](NamedThing.md) |
 | [contributor_orcid](contributor_orcid.md) | 0..1 <br/> [Uriorcurie](Uriorcurie.md) | The ORCiD of the person who added this node | [NamedThing](NamedThing.md) |
@@ -127,7 +172,6 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https
 
 
 
-
 ## Mappings
 
 | Mapping Type | Mapped Value |
@@ -139,6 +183,8 @@ URI: [https://w3id.org/bridge2ai/standards-schema-all/:BiomedicalStandard](https
 
 
 
+
+
 ## LinkML Source
 
 <!-- TODO: investigate https://stackoverflow.com/questions/37606292/how-to-create-tabbed-code-blocks-in-mkdocs-or-sphinx -->
@@ -151,7 +197,6 @@ name: BiomedicalStandard
 description: Represents a standard in the Bridge2AI Standards Registry with particular
   applications or relevance to clinical or biomedical research purposes.
 from_schema: https://w3id.org/bridge2ai/standards-schema-all
-rank: 1000
 is_a: DataStandard
 
 ```
@@ -165,7 +210,6 @@ name: BiomedicalStandard
 description: Represents a standard in the Bridge2AI Standards Registry with particular
   applications or relevance to clinical or biomedical research purposes.
 from_schema: https://w3id.org/bridge2ai/standards-schema-all
-rank: 1000
 is_a: DataStandard
 attributes:
   collection:
@@ -175,12 +219,12 @@ attributes:
     rank: 1000
     is_a: node_property
     domain: NamedThing
-    multivalued: true
     alias: collection
     owner: BiomedicalStandard
     domain_of:
     - DataStandardOrTool
     range: StandardsCollectionTag
+    multivalued: true
   concerns_data_topic:
     name: concerns_data_topic
     description: Subject standard is generally applied in the context of object data
@@ -189,27 +233,41 @@ attributes:
     rank: 1000
     is_a: related_to
     domain: DataStandardOrTool
-    multivalued: true
     inherited: true
     alias: concerns_data_topic
     owner: BiomedicalStandard
     domain_of:
     - DataStandardOrTool
     range: DataTopic
+    multivalued: true
   has_relevant_organization:
     name: has_relevant_organization
     description: Subject standard is managed or otherwise guided buy the object organization(s).
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: related_to
     domain: DataStandardOrTool
-    multivalued: true
     inherited: true
     alias: has_relevant_organization
     owner: BiomedicalStandard
     domain_of:
     - DataStandardOrTool
     range: Organization
+    multivalued: true
+  has_training_resource:
+    name: has_training_resource
+    description: Relevant training resources, standard usage manuals, or other documentation
+      for the standard or tool.
+    from_schema: https://w3id.org/bridge2ai/standards-schema-all
+    rank: 1000
+    is_a: node_property
+    domain: NamedThing
+    alias: has_training_resource
+    owner: BiomedicalStandard
+    domain_of:
+    - DataStandardOrTool
+    range: DataStandardOrTool
+    multivalued: true
   purpose_detail:
     name: purpose_detail
     description: Text description of the standard or tool.
@@ -236,8 +294,8 @@ attributes:
     range: boolean
   requires_registration:
     name: requires_registration
-    description: Does usage of the standard or tool require registrion of a user or
-      group with some organization or managerial body?
+    description: Does usage of the standard or tool require registration of a user
+      or group with some organization or managerial body?
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     is_a: node_property
@@ -359,20 +417,19 @@ attributes:
     rank: 1000
     is_a: related_to
     domain: NamedThing
-    multivalued: true
     inherited: true
     alias: subclass_of
     owner: BiomedicalStandard
     domain_of:
     - NamedThing
     range: NamedThing
+    multivalued: true
   related_to:
     name: related_to
     description: A relationship that is asserted between two named things.
     from_schema: https://w3id.org/bridge2ai/standards-schema-all
     rank: 1000
     domain: NamedThing
-    multivalued: true
     inherited: true
     alias: related_to
     owner: BiomedicalStandard
@@ -381,6 +438,7 @@ attributes:
     - Organization
     symmetric: true
     range: NamedThing
+    multivalued: true
   contributor_name:
     name: contributor_name
     description: The name of the person who added this node.