Refactor zarr volume names

brianreicher · Jul 20, 2023 · b032491 · b032491
1 parent fcfc9d9
commit b032491
Show file tree

Hide file tree

Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/rusty_mws/algo/skeleton_correct.py b/src/rusty_mws/algo/skeleton_correct.py
@@ -16,7 +16,7 @@ def skel_correct_segmentation(
     fragments_file: str,
     fragments_dataset: str,
     seg_file: str,
-    seg_dataset: str,
+    seg_dataset: str = "seg",
     nworkers: int = 25,
     erode_iterations: int = 0,
     erode_footprint: np.ndarray = ball(radius=5),
@@ -34,7 +34,6 @@ def skel_correct_segmentation(
     seeds_dataset (``str``):
         The name of the fragments dataset to read from.
 
-
     fragments_file (``str``):
         Path (relative or absolute) to the zarr file containing fragments.
 

diff --git a/tests/corrected_seg_test.py b/tests/corrected_seg_test.py
@@ -1,6 +1,7 @@
 import rusty_mws
 from funlib.geometry import Coordinate
 import numpy as np
+
 import pytest