https://www.synapse.org/#!Synapse:syn8011998/wiki/411602
-
Add prediction file(s) to:
data/predictions -
Add feature set file(s) to:
data/feature-sets -
Run the app
docker-compose up
The app will be available at http://localhost:3838.
If you want to be able to examine feature values in the app do the following:
-
Install the synapse python client:
pip install synapseclient boto3 -
Download the V8 tarball:
cd data bash download_data.sh -
Prepare the feature database:
Rscript load_sqlite.R ./v8-feature-matrices/ ./features.sqlite
Expected Data Directory Layout
data/
├── features.sqlite
├── feature-sets
│ ├── featuresets_v8.tsv
│ └── ...
└── predictions
├── ACC_randomforest_200127.tsv
└── ...