sensitivity improvements
NOTE: there is a change to svtyper
that we found in evaluating smoove
that will reduce the FPR from genotyping. Please update to svtyper>0.6.0 for best results.
v0.1.5
- sensitivity increases for variants without split reads.
- use a fixed length of 4 in merge (gives much better merging for
smoove merge
) - add new annotate command which takes a gff and annotates with gene names
- increase max_reads argument to svtyper to reduce false negatives
- remove QCFail and duplicate reads from split and disc.bams. This is now
part ofsmoove
but also fixed inlumpy_filter
upstream.