Run: tutorial_introduction #2
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| # Workflow to test Brainstorm source on GitHub-Hosted Linux, Windows and macOS runners | |
| # Workflow name | |
| name: Run tutorial (on Brainstorm source) | |
| # Parameters | |
| env: | |
| MATLAB_VER: R2021b # Oldest "b" release available for Windows runner | |
| # When the workflow will run | |
| on: | |
| # Run on Push to a given branch | |
| push: | |
| branches: | |
| - fake-branch | |
| # Run manually from GitHub Actions tab, it must be in the default branch | |
| workflow_dispatch: | |
| # Inputs that appear on GitHub | |
| inputs: | |
| testname: | |
| type: choice | |
| description: Test to run | |
| options: | |
| - tutorial_introduction | |
| - tutorial_connectivity | |
| - tutorial_coherence | |
| - tutorial_ephys | |
| - tutorial_epilepsy | |
| - tutorial_epileptogenicity | |
| - tutorial_fem_tensors | |
| - tutorial_neuromag | |
| - tutorial_phantom_ctf | |
| - tutorial_phantom_elekta | |
| - tutorial_practicalmeeg | |
| - tutorial_raw | |
| - tutorial_resting | |
| - tutorial_simulations | |
| - tutorial_yokogawa | |
| required: true | |
| bstusername: | |
| description: Brainstorm username to send email | |
| required: true | |
| default: '' | |
| # Name for each run | |
| run-name: "Run: ${{ github.event.inputs.testname }}" | |
| jobs: | |
| # Ubuntu job | |
| Run-Ubuntu: | |
| name: Run on Linux (Ubuntu 20.04) | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| run: ln -s $GITHUB_WORKSPACE/bst-tests/test_brainstorm.m $GITHUB_WORKSPACE/brainstorm3/test_brainstorm.m | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay | |
| # macOS job | |
| Run-MacOS: | |
| name: Run on macOS (12 Monterey) | |
| runs-on: macos-12 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| run: ln -s $GITHUB_WORKSPACE/bst-tests/test_brainstorm.m $GITHUB_WORKSPACE/brainstorm3/test_brainstorm.m | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay | |
| # Windows job | |
| Run-Windows: | |
| name: Run on Windows (Server 2019) | |
| runs-on: windows-2019 | |
| steps: | |
| # Get the Brainstorm code to test | |
| - name: Checkout 'brainstorm3' in 'brainstorm3' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: brainstorm3 | |
| # Setting Matlab, if done after 2nd checkout, Matlab cannot find brainstorm.m | |
| - name: Set up Matlab | |
| uses: matlab-actions/setup-matlab@v1 | |
| with: | |
| release: ${{ env.MATLAB_VER }} | |
| # Get code to do the testing | |
| - name: Checkout 'bst-tests' in 'bst-tests' | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: brainstorm-tools/bst-tests | |
| ref: 'main' | |
| # TOKEN_BST_TEST is a PAT in secrets in brainstorm3 | |
| # TOKEN was create on rcassani account | |
| token: ${{ secrets.TOKEN_BST_TEST }} | |
| path: bst-tests | |
| # Keep script at same level as brainstorm.m | |
| - name: Create symbolic link for test_brainstorm.m | |
| shell: cmd | |
| run: | | |
| mklink %GITHUB_WORKSPACE%\brainstorm3\test_brainstorm.m %GITHUB_WORKSPACE%\bst-tests\test_brainstorm.m | |
| pwd | |
| dir | |
| # Run testing | |
| - name: Run script | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd("brainstorm3"), brainstorm test_brainstorm.m ${{ github.event.inputs.testname }} ${{ github.event.inputs.bstusername }} local | |
| startup-options: -nodisplay |