Merge pull request #459 from brainpy/updates

add `brainpy.dyn.Alpha` synapse model
brainpy · Aug 25, 2023 · 1201310 · 1201310
2 parents 574c34a + cd67133
commit 1201310
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Showing 7 changed files with 34 additions and 31 deletions.
diff --git a/brainpy/_src/dyn/synapses/abstract_models.py b/brainpy/_src/dyn/synapses/abstract_models.py
@@ -1,14 +1,12 @@
 from typing import Union, Sequence, Callable, Optional
 
-import jax.numpy
 from brainpy import math as bm
 from brainpy._src.context import share
 from brainpy._src.dyn._docs import pneu_doc
 from brainpy._src.dyn.base import SynDyn
 from brainpy._src.integrators.joint_eq import JointEq
 from brainpy._src.integrators.ode.generic import odeint
 from brainpy._src.mixin import AlignPost, ReturnInfo
-from brainpy._src.initialize import Constant
 from brainpy.types import ArrayType
 
 __all__ = [
@@ -368,9 +366,9 @@ class Alpha(DualExpon):
           Cambridge: Cambridge UP, 2011. 172-95. Print.
 
   Args:
+    %s
     tau_decay: float, ArrayType, Callable. The time constant [ms] of the synaptic decay phase.
        The name of this synaptic projection.
-    %s
   """
 
   def __init__(

diff --git a/brainpy/dyn/synapses.py b/brainpy/dyn/synapses.py
@@ -2,6 +2,7 @@
 from brainpy._src.dyn.synapses.abstract_models import (
   Delta,
   Expon,
+  Alpha,
   DualExpon,
   DualExponV2,
   NMDA,

diff --git a/docs/advanced_tutorials.rst b/docs/advanced_tutorials.rst
@@ -1,10 +1,37 @@
 Advanced Tutorials
 ==================
+
 This section contains tutorials that illustrate more advanced features of BrainPy.
 
+
+
+Advanced math
+-------------
+
+
+.. toctree::
+   :maxdepth: 1
+
+   tutorial_advanced/differentiation.ipynb
+
+
+
+Interoperation
+--------------
+
+
+.. toctree::
+   :maxdepth: 1
+
+   tutorial_advanced/integrate_flax_into_brainpy.ipynb
+   tutorial_advanced/integrate_bp_lif_into_flax.ipynb
+   tutorial_advanced/integrate_bp_convlstm_into_flax.ipynb
+
+
+Advanced dynamics analysis
+--------------------------
+
 .. toctree::
-   :maxdepth: 2
+   :maxdepth: 1
 
-   tutorial_advanced/math.rst
-   tutorial_advanced/interoperation.rst
-   tutorial_advanced/analysis.rst
+   tutorial_advanced/advanced_lowdim_analysis.ipynb
diff --git a/docs/index.rst b/docs/index.rst
@@ -132,7 +132,7 @@ Learn more
 
       .. card:: :material-regular:`science;2em` BDP Tutorials
          :class-card: sd-text-black sd-bg-light
-         :link: brain_dynamics_tutorials.html
+         :link: tutorials.html
 
    .. grid-item::
       :columns: 6 6 6 4

diff --git a/docs/tutorial_advanced/analysis.rst b/docs/tutorial_advanced/analysis.rst
diff --git a/docs/tutorial_advanced/interoperation.rst b/docs/tutorial_advanced/interoperation.rst
diff --git a/docs/tutorial_advanced/math.rst b/docs/tutorial_advanced/math.rst