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last min tweaks #4

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Oct 7, 2024
Merged

last min tweaks #4

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4 changes: 2 additions & 2 deletions index.qmd
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Original file line number Diff line number Diff line change
Expand Up @@ -41,8 +41,8 @@ format:

## Schedule{.smaller}
::: {.incremental}
- Installing BrainGlobe (30 mins)
- Introduction to Image analysis with Napari
- Installing BrainGlobe and Napari (30 mins)
- Introduction to Image analysis with Napari (60 mins)
- Introduction to BrainGlobe (30 mins)
- Registering whole brain microscopy images with brainreg (30 mins)
- Segmenting structures in whole brain microscopy images with brainglobe-segmentation (30 mins)
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15 changes: 7 additions & 8 deletions slides/installation.qmd
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@@ -1,18 +1,17 @@

## Install napari and BrainGlobe

#### Silicon mac users
```bash
pip install brainglobe
conda install niftyreg
```


#### All other users
### Everyone
```{.bash}
conda create -n brainglobe-env python=3.12
conda activate brainglobe-env
pip install brainglobe
```

#### Silicon mac users (additionally)
```bash
conda install niftyreg
```

## Double-check installation {.smaller}
:::: {.columns}
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